Table 7. Parameter estimates using synonymous, replacement or noncoding sites^a.

Sites	t 0 (2-p)b	f 0 (2-p)	t 1 (2-p)	f 1 (2-p)	t (4-p)c	g (4-p)	f 0 (4-p)	f 1 (4-p)
D. mauritiana
Synonymous	342909	1.3928	397590	1.6909	397590	0.9178	1.3387	1.6909
Replacement	273108	2.0687	131234	1.6800	116719	1.3626	3.5006	1.7646
Noncoding	398895	1.1844	252692	1.3836	246834	1.2418	1.2980	1.3927
D.m. excluding CG15216
Synonymous	342909	1.3928	241935	2.5200	241935	1.1518	1.5567	2.5200
Replacement	273108	2.0687	77479	3.3600	53402	1.5094	6.4656	4.4240
Noncoding	398895	1.1844	144175	2.2525	131156	1.4257	1.5609	2.3769
D. sechellia
Synonymous	514079	1.5747	433735	1.0000	433735	1.1208	1.6811	1.0000
Replacement	557945	2.1141	164042	2.7560	123744	2.0068	6.0234	3.3278
Noncoding	478094	1.8391	235385	2.3725	225659	1.4014	2.7777	2.4317
D.s. excluding CG15216
Synonymous	514079	1.5747	387097	0.5000	387097	1.1909	1.7632	0.5000
Replacement	557945	2.1141	116219	2.5933	61854	2.1503	11.0497	3.9938
Noncoding	478094	1.8391	122330	3.3810	104146	1.5946	4.8518	3.7967

^aparameter estimates calculated using θ̂_π.

^b2-parameter model.

^c4-parameter model.