Table 2.

Selected genes differentially expressed between juicy and woolly fruit

Clone IDa	Homologue definition	Organism	GenBank	COBb	E value	IDENTc	SIMd	CAZye	Experimental conditionf
									J	W
Genes with some function related to cell wall metabolism
PP_LEa0003N12f	Cobra (Cob)	A. thaliana	NP_568930	96	0.0	78	88	–	1.80	0.56
PP_LEa0004K19f	Glucan synthase	O. sativa	NP_916159	100	7e-75	68	85	GT48	1.25	0.80
PP_LEa0005N23f	Galactosyltransferase family protein	A. thaliana	NP_193838	99	2e-80	72	86	GT31	1.84	0.54
PP_LEa0006P14f	Endopolygalacturonase (EndoPG)	P. persica	AAC64184	100	0.0	99	100	GH28	3.23	0.31
PP_LEa0008K15f	Cinnamoyl-CoA reductase (CCR)	A. thaliana	NP_200657	89	1e-81	75	88	–	1.99	0.50
PP_LEa0015N02f	Pectate lyase (PL)	A. thaliana	NP_191074	100	8e-90	80	92	PL1	1.93	0.52
PP_LEa0033B07f	Cotton fibre expressed protein 2	G. hirsutum	AAC33277	95	2e-18	40	55	–	2.17	0.46
Genes related to endomembrane traffic
PP_LEa0001H21f	ER lumen protein retaining receptor 2 (ERD2)	A. thaliana	NP_564326	99	2e-72	75	90	n/a	1.85	0.54
PP_LEa0004B09f	Coatomer protein gamma 2-subunit (gamma 2-COP)	O. sativa	BAC84213	90	9e-160	89	95	n/a	0.85	1.17
PP_LEa0008F22f	Golgi transport protein SFT2-like	A. thaliana	NP_567749	100	5e-96	78	87	n/a	1.45	0.68
PP_LEa0009A08f	SNARE-like protein Vap 27–2	A. thaliana	NP_172359	93	7e-46	41	53	n/a	1.24	0.81
PP_LEa0009I13f	Dynamin-like protein 1A (ADL1A)	G. max	AAB05992	99	4e-94	94	97	n/a	1.34	0.74
PP_LEa0009K22f	ROC7 cyclophilin	A. thaliana	NP_200679	100	7e-89	82	92	n/a	1.74	0.57
PP_LEa0013L18f	Rab GTP-binding protein (Rab5)	N. tabacum	CAA50609	96	5e-79	89	96	n/a	1.89	0.53
PP_LEa0014G24f	Vesicle-associated membrane protein 722 (Vamp 722)	O. sativa	CAD70274	99	5e-99	86	94	n/a	2.10	0.48
PP_LEa0017D15f	Clathrin-binding protein β-adaptin	A. thaliana	NP_192877	89	2e-35	75	88	n/a	0.75	1.33
PP_LEa0020B02f	Rab GTP-binding protein (Rab11)	G. hirsutum	AAD48018	80	1e-38	85	92	n/a	1.56	0.64
PP_LEa0024O23f	GTPase-activating protein Sec23	A. thaliana	NP_563741	86	1e-91	89	94	n/a	2.77	0.36
PP_LEa0030L15f	Secretory carrier membrane protein like (SCAMP-like)	P. sativum	AAC82326	96	9e-125	75	88	n/a	1.52	0.66

Nineteen differentially expressed genes were grouped into two physiological processes: cell wall metabolism and endomembrane traffic.

^aClone identification according to Clemson University Genomics Institute database (http://www.genome.clemson.edu/projects/peach/est/).

^bCOB, percentage of P. persica sequence length that aligned with the corresponding homologue.

^cIDENT and

^dSIM, the identity and similarity percentages, were obtained using the BLOSUM62 matrix (http://www.ncbi.nlm.nih.gov).

^eCAZy database classification (http://afmb.cnrs-mrs.fr/∼pedro/CAZY).

^fExpression ratios of juicy/woolly (J) and woolly/juicy (W).