Table 1.
Primers for PCR analysis
| Gene | Forward | Reverse |
|---|---|---|
| Promoter-specific primers | ||
| OCRL | Refer to OCRL (0) below | Refer to OCRL (0) below |
| PGK1 | ACGCGGCTGCTCTGGGC | TTAGGGGCGGAGCAGGAAG |
| SMCX | CTTGTTCCTCCGCCGTTGCA | CCATCTTGGTTTGTCAGCGT |
| SB1.8 | CAGGGTGCTGTGGAATCTATT | TTGTCATACTCCTGCGCCA |
| POLA | CTGGGGAAAACGATCCAACC | CTGAAAGCCAATCAGCGGC |
| SOX3 | CGAACCTGTCAATCACGGGT | CCTGATGAGTTCTCTCGAAC |
| IDS | GCGCAGTCTTCATGGGTTC | CGGGGTGGCGGCATTTCG |
| XPCT | CTGGCCCGGCTCCTGGC | GCTTTGTTTGCGCCAACCTG |
| NDP | TGGAAAAGTGCCATTGCAGT | CTCGCCCTTGTTCTGCTACG |
| XIST | xst31r (ref. 43) | xst 29r (ref. 43) |
| ZFX | Refer to ZFX (0) below | Refer to ZFX (0) below |
| ZFX-specific primers | ||
| ZFX (−8) | CACATCTCTCCTCTACTTCCT | TGCTTCCCAGGTTTTCACTA |
| ZFX (0) | GTGCTGTGTTAAAGGATAGC | AGGAGCCCAATTGGGTATGG |
| ZFX (20) | CTGGTTACCCTTGTGGGAAC | GGTCTATCAAGTGCACACAT |
| ZFX (50) | AAGACTGTACCGCCTTCACT | TGGGTACAGGTGGTTCTCC |
| ZFX (65) | GGTCACTGTAATGCCAGATC | GCATATAGGCATAGCATCTG |
| XIST-specific primers | ||
| XIST (−0.5) | TCCGTTCTCTTATGGTTGGG | TACCATCTTCAAGGGACTTC |
| XIST (0) | ACGTGTCAAGAAGACACTAG | xst 29r (ref. 43) |
| XIST (1.5) | AAGGTCTTGCCGCAGTGTAA | GTTGGGTTATGCAGCAATCC |
| XIST (3) | CTGTGTTGGCCACCTAAAAC | GCACAGCAAAAAGCGCAGTA |
| XIST (10) | CTTGTTAAGCAAGCGCCCCA | CATGACACCATGGCTACCTG |
| XIST (20) | TGAAGACCCATGTCTCTACA | TGGCTCACGTTCTGCTTTTC |
| XIST (25) | CTTTGCTCTCCTAGATGTGG | GAGAAGGGGAAGGGGTAACA |
| XIST (32) | CAGCATGGGTGACCACCAGA | GTTAGGGACAGTGAGTTAGAA |
| OCRL-specific primers | ||
| OCRL (0) | ACAAGTCTAGCTCCCAGCT | CCGATCCGACGACACTGGC |
| OCRL (1) | GAAAGACTTCCCAGTTTCTG | ATCACCATATTTGGCCTGAC |
| OCRL (2) | CCAACACCATGCGGAAGCTC | TATCAACAGGCCACTGTCTG |
| OCRL (5) | AGGCATTTAGCTACCAGAAG | CAGGGACCTATATGACAGGA |
| OCRL (25) | GCCTATCACTTCCTTGCTTA | AGGCACAGAGACAGTAAATC |
| OCRL (40) | GCAGCAAAACAGCTGGCTGT | AGGAGAAGGAGCATACAGAA |