TABLE 1.
Strains, plasmids, and primers
Strain, plasmid, or primer | Genotype, description, or sequence | Reference or source |
---|---|---|
Strains | ||
RN6390 | WT laboratory strain | 35 |
ALC42 | DB clinical isolate | 12 |
ALC32 | DB sarA::Tn917 | 12 |
SMC1062 | MZ100 laboratory strain isogenic to RN6390 | 61 |
SMC2715 | MZ100 sarA::aphA-3 | 61 |
ALC136 | RN6390 sarA::Tn917 | 13 |
ALC600 | RN6390 sarA::Tn917 pCL84-sarA | 11 |
SMC2713 | MZ100 ica::tetK | 61 |
ALC2629 | RN6390 fnbA::tet | This study |
ALC2634 | RN6390 fnbB::erm | This study |
CMS392 | RN6390 ΔgraR | 51 |
CMS399 | RN6390 ΔgraS | 51 |
CMS400 | RN6390 ΔvraG | 51 |
ALC4301 | Mu50 (VISA) | 39 |
ALC5908 | Mu50 ΔgraR | 51 |
ALC960 | Col (methicillin-resistant S. aureus) | 26 |
ALC5542 | Col ΔgraR | 51 |
SH1000 | rsbU+ | 33 |
SH1000 acn | acn | Simon Foster |
ALC1745 | RN6390 pALC1484 | 47 |
ALC1747 | RN6390 pALC1747 | 73 |
Plasmids | ||
pEPSa5 | pC194-based expression vector | 22 |
pEPSAgraR | pEPSA5 with graR gene | 51 |
pEPSAgraRS | pEPSA5 with graRS genes | 51 |
pALC1484 | pSK236 plasmid with promoterless gfp | 47 |
pALC1747 | fnbA-gfp transcription fusion derived from pALC1484 | 73 |
Primersa | ||
gyrBsybrF | GGTGCTGGGCAAATACAAGT | |
gyrBsybrR | TGGGATACCACGTCCGTTAT | |
F-fnbA-rt | ACAAGTTGAAGTGGCACAGCC | |
R-fnbA-rt | CCGCTACATCTGCTGATCTTGTC | |
F-fnbB-rt | CACCGAAAACTGTGCAAGCA | |
R-fnbB-rt | TTCCTGTAGTTTCCTTATCAGCAACTT |
Primers were used for qRT-PCR.