Table 5.
Most highly expressed grape EST contigs in the grape berry stage II libraries, based on MPSS signature abundance.
| Contig ID | Signature abundancea | ESTsb | ESTsc | Total ESTsd | BlastX definition [species of closest EST match] |
| 1027142, 1026885, 1027113 | 108049 | 31 | 81 | 112 | 2S albumin precursor [Vitis vinifera] |
| 1027101 | 67435 | 52 | 66 | 118 | AF449424_1 11S globulin-like protein [Corylus avellana] |
| 1027135, 1027103, 1027117 | 60308 | 17 | 36 | 53 | Storage protein [Corylus avellana, Coffea arabica and Prunus dulcis] |
| 1027226 | 46226 | 49 | 31 | 80 | conglutin gamma [Lupinus albus] |
| 1027222 | 18313 | 34 | 8 | 42 | AF240006_1 7S globulin [Sesamum indicum] |
| 1027379, 1026935 | 17310 | 7 | 8 | 15 | plasma membrane aquaporins |
| 1027444, 1027445, 1027446 | 13927 | 185 | 187 | 372 | Endochitinase and class Ib chitinase [Galega orientalis] |
| 1027477 | 13748 | 2 | 4 | 6 | hexameric polyubiquitin |
| 1027684, 1027685 | 10450 | 3 | 17 | 20 | expressed protein [Arabidopsis thaliana] |
| 1027454 | 6505 | 12 | 7 | 19 | AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum] |
| 1027543, 1027547, 1027548, 1027553, 1027554 | 5994 | 3 | 14 | 17 | T06239 probable glutathione transferase (EC 2.5.1.18), 2,4-D inducible – soybean |
| 1026907 | 5460 | 4 | 4 | T10174 hypothetical protein – castor bean | |
| 1027486 | 5403 | 3 | 2 | 5 | hexameric polyubiquitin |
| 1027455 | 4782 | 1 | 1 | AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum] | |
| 1027495 | 4688 | 2 | 4 | 6 | ARF_ORYSA ADP-ribosylation factor |
| 1027181 | 4668 | 2 | 1 | 3 | TCTP_HEVBR Translationally controlled tumor protein homolog (TCTP) |
| 1026972, 1027353, 1027133 | 4642 | 14 | 28 | 42 | metallothionein-like protein type 2 [Persea americana] |
| 1027119 | 4419 | 1 | 6 | 7 | ATFP3 [Arabidopsis thaliana] |
| 1027883 | 4390 | 1 | 1 | LTCOR11 [Lavatera thuringiaca] | |
| 1026987 | 4208 | 36 | 22 | 58 | AF281656_1 putative transcription factor [Vitis vinifera] |
The expression level was determined based on the signature with the maximum normalized abundance.
a The sum of abundance of matching 17-base MPSS signatures from the grape library.
b ESTs derived from stage II green, hard berries
c ESTs derived from stage II green, soft berries
d Total signatures matching contigs present in the UC Davis berry stage II libraries.