Table 9.
Most highly expressed grape EST contigs from non-vinifera libraries based on MPSS signature abundance.
| Contig ID | Signature abundancea | Species | BlastX definition |
| CB518189 | 17310 | Vci × Vru | AF141899_1 putative aquaporin PIP1–3 [Vitis berlandieri × Vitis rupestris] |
| CF205324 | 13748 | Vru × Var | polyubiquitin [Elaeagnus umbellata] |
| CB288827 | 10450 | Vae | expressed protein [Arabidopsis thaliana] |
| CF203205 | 5994 | Vru × Var | GTXA_TOBAC PROBABLE GLUTATHIONE S-TRANSFERASE PARA (AUXIN-REGULATED PROTEIN PARA) (STR246C PROTEIN) |
| CB518203 | 4688 | Vci × Vru | ADP-ribosylation factor [Arabidopsis thaliana] |
| CB518174 | 4668 | Vci × Vru | TCTP_ORYSA Translationally controlled tumor protein homolog (TCTP) |
| CB518217 | 4642 | Vci × Vru | MT1_CASGL Metallothionein-like protein 1 (MT-1) |
| CF206203 | 4208 | Vru × Var | AF281656_1 putative transcription factor [Vitis vinifera] |
| CF202582 | 3036 | Vru × Var | No hit |
| CF568957 | 2435 | Vsh | T09838 chlorophyll a/b binding protein precursor – upland cotton chloroplast |
| CF204795 | 2164 | Vru × Var | phase-change related protein [Quercus robur] |
| CF568866 | 2055 | Vsh | DNJH_CUCSA DnaJ protein homolog (DNAJ-1) |
| CB518164 | 1726 | Vci × Vru | AF121261_1 elongation factor 1-alpha 1; EF-1-alpha1 [Lilium longiflorum] |
| CF568912, CF568996 | 1354 | Vsh | RBS_FAGCR Ribulose bisphosphate carboxylase small chain, chloroplast precursor (RuBisCO small subunit) |
| CB518167 | 913 | Vci × Vru | 60S ribosomal protein L26 (RPL26A) [Arabidopsis thaliana] |
| CB289025 | 866 | Vae | seed specific protein Bn15D1B [Brassica napus] |
| CB602249 | 846 | Vae | No hit |
| CB289590 | 802 | Vae | 60S ribosomal protein L27a [Panax ginseng] |
| CB288422 | 779 | Vae | 60S ribosomal protein L19 (RPL19B) [Arabidopsis thaliana] |
| CB518201 | 714 | Vci × Vru | ARF_ORYSA ADP-ribosylation factor |
a The sum of abundance of matching 17-base MPSS signatures from the grape library.
b Species abbreviations are as follows: Vae = Vitis aestivalis; Vru × Var = D8909-15 (Vitis rupestris 'A. de Serres' × Vitis arizonica), Vci × Vru = Vitis cinerea × Vitis rupestris, Vsh = Vitis shutthelworthii.