Table 4.
Variable | Proportion Positive | Threshold | Mutation-Negative above Threshold | Mutation-Positive above Threshold | Mutation-Positive below Threshold | Mutation-Negative below Threshold | Total |
---|---|---|---|---|---|---|---|
UCI sample | 0.017 | 0.05 | 80.9 | 8.7 | 8.7 | 901.6 | 1000 |
0.1 | 64.8 | 7.5 | 10 | 917.8 | 1000 | ||
0.2 | 47.3 | 5 | 12.5 | 935.2 | 1000 | ||
FHCRC sample | 0.089 | 0.05 | 351.6 | 67.7 | 20.8 | 559.9 | 1000 |
0.1 | 299.5 | 62.5 | 26 | 612 | 1000 | ||
0.2 | 242.2 | 62.5 | 26 | 669.3 | 1000 | ||
High-risk sample | 0.279 | 0.05 | 418.8 | 241.5 | 38 | 301.7 | 1000 |
0.1 | 341.6 | 230.4 | 49.1 | 378.9 | 1000 | ||
0.2 | 264.4 | 209.4 | 70 | 456.2 | 1000 |
These calculations consider the hypothetical scenario in which individuals are referred for genetic counseling whenever their predicted probability using BRCAPRO exceeds the threshold indicated in the third column. “Positive” and “negative” refer to the results of genetic testing, as described in the Methods section. Counts are rescaled to add up to 1000 for ease of comparison. See Appendix Table 4 and Appendix Table 5 (available at www.annals.org) for actual sample sizes and Appendix Table 6 (available at www.annals.org) for the similar calculations using the other models. FHCRC = Fred Hutchinson Cancer Research Center; UCI = University of California, Irvine (Orange County).