Table 1.
Data resources used by B2G to generate novel annotations
| Resources | Date | File | From | Entries |
|---|---|---|---|---|
| Gene Ontology DB | Jan.2008 | go_200801-assocdb-data | Gene Ontology (http://www.geneontology.org) | 3.484.490 (gene_products) |
| gene_info | 08.01.08 | gene_info.gz | NCBI Gene related data (ftp://ftp.ncbi.nlm.nih.gov/gene/data/) | 3.352.373 |
| gene2accession | 08.01.08 | gene2accession.gz | NCBI Gene related data (ftp://ftp.ncbi.nlm.nih.gov/gene/data/) | 10.405.867 |
| Non-redundant | ∼Aug 2007 | nr.tar.gz | NCBI (http://www.ncbi.nlm.nih.gov/ftp/) | – |
| PIR mapping file | 01.26.06 | NREF2ids.dat | Protein Information Resource (ftp://ftp.pir.georgetown.edu/pir_databases/nref/) | 8.002.357 |
| Annex | 2006 | annex.txt | Norwegian University of Science and Technology (http://www.ntnu.no) Annex project: (http://www.goat.no) | 6721 |
| EC2GO | Nov. 1008 | ec2go.txt | Gene Ontology (http://www.geneontology.org) | 3665 |
| Blast | v. 2.2.14 | – | NCBI (http://www.ncbi.nlm.nih.gov/ftp/) | – |
| InterProScan | ∼Aug 2007 | – | EBI (http://www.ebi.ac.uk/InterProScan/) | – |