Table 4.
Amino acid and nucleotide sequences of the RATs
| RAT | Motif
|
% | Number | |
|---|---|---|---|---|
| Amino acid* | Nucleotide | |||
| A | NANP | aat gca aac cca | 55.1 | 566 |
| B | NANP | ... ... ..t ..t | 16.1 | 165 |
| C | NANP | ... ... ..t ... | 7.6 | 78 |
| D | NANP | ... ..c ..t ..a | 6.2 | 64 |
| E | NANP | ... ... ... ..c | 6.2 | 64 |
| F | NANP | ..c ... ... ..c | 5.1 | 52 |
| G | NANP | ... ..c ... ... | 3.1 | 32 |
| H | NANP | ... ... ... ..t | 0.3 | 3 |
| I | NANP | ..c ... ... ... | 0.2 | 2 |
| J | NANP | ... ..c ... ..c | 0.1 | 1 |
| Z† | NANP | ... ... ..t ..c | — | — |
| M | NVDP | ... .t. g.t ... | 52.3 | 46 |
| N | NVDP | ... .t. g.t ..c | 31.8 | 28 |
| O | NVDP | ..c .t. g.t ..t | 14.8 | 13 |
| P | NVDP | ... .t. g.t ..t | 1.1 | 1 |
| X† | NVNP | ... .t. ..t ..c | — | — |
% refers to the RAT incidence within its amino acid motif.
*
The composition of the amino acid motifs is NANP: Asn, Ala, Asn, Pro; NVDP: Asn, Val, Asp, Pro; NVNP: Asn, Val, Asn, Pro.
†
RATs found exclusively in P. reichenowi.