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Plots following the stability of the models during the dynamics runs. Rmsd plots calculated from all-atoms (black), backbone-only atoms (light gray), and G-tetrads (dark gray) for (a) model 1 (45-mer), (b) model 2 (45-mer with empty binding site), (c) model 3 (45-mer with ligand in binding site) and (d) model 4 (93-mer). The tetrads are the most stable subsegment. The rmsds of G-tetrads from individual 21-mer units are plotted for model 2 (gray shades) in (b).
