Experiments (21) and calculations of optical difference spectra of PS-II core complexes from Thermosynechococcus elongatus. The calculations were performed using the site energies determined previously (18), except for ChlD1 which was shifted by 4 nm to the red. The corresponding wavelengths assigned to each pigment are PD1, 666 nm; PD2, 666 nm; ChlD1, 682 nm; ChlD2, 667 nm; PheoD1, 672 nm; and PheoD2, 675 nm. The two experimental T-S spectra (bottom panel) were obtained for singly (open squares) and doubly (solid circles) reduced QA. In the latter case it is also possible that QA has dissociated from the core complex.