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. 2008 Apr 28;24(12):1465–1466. doi: 10.1093/bioinformatics/btn208

Table 1.

Overview of query syntax

Search criteria Example
Single term aquaporin
Phrase “water channel”
Restrict by attribute field gene_title: aquaporin
Both terms must exist transcription and factor
At least one of the terms must exist transcription or factor
First term must exist but second must not transcription not factor
Specify a required term +transcription factor
Prohibit a term transcription -factor
Single character wildcard prot?in
Multiple character wildcard HSP*
Inclusive range degree:[1 to 3]
Exclusive search degree:{1 to 3}
Control Boolean logic (intrinsic or integral) and membrane
Group terms to a single field gene_title:(+60S +“ribosomal protein”)
Escape special characters \(1\+1\)\:2

Notes: Query elements are case insensitive; wildcard symbols cannot be used as the first character of a search; the NOT operator requires greater than one term; OR is the default operator for joining search terms.