Table 3.
Phased Genotypes at Four Key HERC2 Locus SNPs versus Eye Color
| rs1129038 | rs12913832 | rs916977 | rs1667394 | Phaseda | Blue | Brown | |
|---|---|---|---|---|---|---|---|
| 1b | A/A | C/C | G/G | A/A | ACGA/ACGA | 169 | 1 |
| 2b,c,d | A/G | C/T | G/G | A/A | ACGA/GTGA | 1 | 47 |
| 3c,d | A/G | C/T | A/G | A/G | ACGA/GTAG | 10 | 81 |
| 4d | A/G | C/T | G/G | A/G | ACGA/GTGG | 0 | 8 |
| 5 | G/G | T/T | A/A | G/G | GTAG/GTAG | 0 | 18 |
| 6 | G/G | T/T | A/G | A/G | GTAG/GTGA | 0 | 14 |
| 7 | A/A | C/C | A/G | A/G | ACGA/ACAG | 1 | 1 |
| 8 | A/G | C/C | A/G | A/G | ACGA/GCAG | 1 | 1 |
| 9 | A/G | C/C | G/G | A/A | ACGA/GCGA | 1 | 1 |
| 10 | G/G | T/T | A/G | G/G | GTAG/GTGG | 0 | 1 |
| 11 | G/G | T/T | G/G | A/A | GTGA/GTGA | 0 | 3 |
a
AC phased rs1129038 and 12913832 in bold.
b
The Fisher exact test comparing counts for row 1 versus 2, p = 2 × 10−16.
c
Row 2 versus 3, p = 0.097.
d
Row 2 versus 3 versus 4, p = 0.195.