TABLE 3.
Haplotype organization for the six genes under survey
|
Sh2
|
Bt2
|
SssI
|
Ae1
|
Wx
|
O2: | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Frequency (%) | H
|
Frequency (%) | H
|
Frequency (%) | H
|
Frequency (%) | H
|
Frequency (%) | H
|
Frequency (%) | ||||||
| H | S1 | S2 | S1 | S2 | S1 | S2 | S1 | S2 | S1 | S2 | ||||||
| H1 | 71.9 | a | a | 63.6 | a | a | 82.6 | a | a | 24.0 | a | a | 27.9 | a | a | 20.5 |
| H2 | 9.2 | b | a | 7.1 | b | a | 1.2 | b | a | 8.4 | a | b | 0.8 | a | b | 24.0 |
| H3 | 7.2 | a | b | 14.1 | b | b | 7.8 | c | b | 15.6 | b | b | 7.8 | a | c | 17.1 |
| H4 | 1.3 | c | a | 1.1 | a | b | 5.4 | d | b | 5.2 | b | c | 1.6 | a | d | 1.4 |
| H5 | 2.6 | d | a | 0.5 | d | b | 1.8 | c | c | 1.3 | b | d | 2.3 | a | e | 1.4 |
| H6 | 7.8 | d | c | 0.5 | d | a | 1.2 | e | d | 1.9 | c | e | 1.6 | b | e | 3.4 |
| H7 | 3.3 | c | a | 20.8 | c | d | 4.7 | b | a | 1.4 | ||||||
| H8 | 0.5 | e | c | 0.6 | c | c | 0.8 | c | c | 1.4 | ||||||
| H9 | 5.4 | f | c | 14.9 | d | c | 0.8 | c | a | 1.4 | ||||||
| H10 | 2.7 | g | d | 0.6 | d | b | 3.9 | c | d | 6.8 | ||||||
| H11 | 0.5 | g | a | 0.6 | e | c | 0.8 | c | f | 3.4 | ||||||
| H12 | 0.5 | f | a | 5.8 | f | f | 0.8 | b | g | 2.1 | ||||||
| H13 | 0.8 | b | h | 2.7 | ||||||||||||
| H14 | 22.5 | b | f | 0.7 | ||||||||||||
| H15 | 0.8 | c | i | 1.4 | ||||||||||||
| H16 | 0.8 | b | i | 1.4 | ||||||||||||
| H17 | 0.8 | a | i | 2.1 | ||||||||||||
| H18 | 0.8 | a | j | 2.1 | ||||||||||||
| H19 | 7.8 | a | k | 0.7 | ||||||||||||
| H20 | 10.9 | a | f | 2.1 | ||||||||||||
| H21 | 0.8 | a | g | 2.7 | ||||||||||||
| H22 | 0.8 | a | h | |||||||||||||
There are two separate segments per genes (S1 and S2) except for O2 (7 concatenated segments). The haplotypes observed for each segment were named alphabetically (a--k), as shown in supplemental Tables S3, S5, S7, S9 and S11.