TABLE 4.
Haplotype number and type, estimated number of mutations, and recombinations per kb observed in the sample of 194 accessions for the six genes under survey
| Sh2 | Bt2 | SssI | Ae1 | Wx | O2 | |
|---|---|---|---|---|---|---|
| Sequence length (kb) | 1.331 | 1.008 | 1.525 | 1.377 | 2.267 | 3.771 |
| Total length covered (kb) | 3.952 | 2.313a | 3.933b | 16.474a | 3.062 | 4.251 |
| Number of haplotypes | 6 | 12 | 6 | 12 | 22 | 21 |
| Number of major haplotypes | 1 | 2 | 1 | 4 | 3 | 3 |
| Number of minor haplotypesc | 5 | 10 | 5 | 8 | 19 | 18 |
| Number of mutations/kbd | 16.5 | 6.0 | 5.9 | 18.2 | 12.3 | 13.5 |
| Number of indels/kbd | 1.5 | 2.0 | 2.0 | 5.8 | 2.2 | 2.4 |
| Estimated minimal number of recombinationd | 1 | 0 | 0 | 2 | 2 | 0 |
| Estimated minimal number of recombination events/total length covered (kb) | 0.25 | 0 | 0 | 0.12 | 0.65 | 0 |
a
Length covered based on the maize sequence accession.
b
Length covered based on the rice sequence accession.
c
Haplotype with frequency <10%
d
Based on concatenated sequences, using DnaSP (Rozas et al. 2003).