Table 3.
Summary of TreeSAAP output.
| M seq | MCOX2-extension only | F seq | ||||
|---|---|---|---|---|---|---|
| Amino Acid Property | 1 -- 3 | 6 -- 8 | 1 -- 3 | 6 -- 8 | 1 -- 3 | 6 -- 8 |
| Composition | neg/destab | |||||
| Hydropathy | neg/destab | neg/destab | neg/stab | neg/destab | ||
| Isoelectric point | neg/stab | neg/stab | ||||
| Molecular volume | pos/stab | neg/destab | pos/stab | |||
| Polar requirement | neg/destab | neg/destab | pos/stab | neg/destab | ||
| Polarity | neg/destab | pos/stab | neg/destab | pos/stab | neg/destab | |
| Alpha-helical tendencies | neg/destab | |||||
| Turn tendencies | neg/destab | neg/destab | neg/destab | |||
The six "most important" TreeSAAP categories according to [34]. Two additional properties (Alpha-helical tendencies and Turn tendencies) are given due to their potential importance to transmembrane helix formation. Absence of selection means neutrality.