Table 2.
Column scores of different programs on IRMBASE 2
| Method (Protein) | REF1 | REF2 | REF3 | REF4 | Total |
| DIALIGN-TX | 64.17 | 77.36 | 70.30 | 72.23 | 71.02 |
| DIALIGN-T 0.2.2 | 67.040 | 75.810 | 70.400 | 70.440 | 70.930 |
| DIALIGN 2.2 | 68.520 | 73.32- | 65.34- | 69.50- | 69.17-- |
| CLUSTAL W2 | 00.00-- | 00.00-- | 00.11-- | 02.86-- | 00.74-- |
| T-COFFEE 5.56 | 34.84-- | 40.87-- | 43.62-- | 49.56-- | 42.22-- |
| POA V2 | 50.99- | 16.95-- | 11.79-- | 10.18-- | 22.47-- |
| MAFFT 6.240 L-INSi | 37.81-- | 39.54-- | 32.79-- | 38.75-- | 32.22-- |
| MAFFT 6.240 E-INSi | 45.70- | 52.37-- | 43.11-- | 54.82-- | 49.00-- |
| MUSCLE 3.7 | 04.65-- | 06.87-- | 14.80-- | 19.65-- | 11.49-- |
| PROBCONS 1.12 | 36.77-- | 43.47-- | 41.89-- | 43.56-- | 41.42-- |
Average column scores (CS) of the benchmarked programs on the core blocks of IRM-BASE 2. The symbols are analogous to Table 1.