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. 2008 Jul 11;4(7):e1000111. doi: 10.1371/journal.pcbi.1000111

Table 1. Summary of MD Simulations.

Receptor/Oligomeric State PDB ID Length of Simulation Activity of State
Total Time Period Used in Analysis
PXR-RXR heterodimer* 1ILG 30 ns 20–30 ns Inactive
PXR-RXR heterotetramer* 1ILG 30 ns 20–30 ns Active-capable
PPARγ467L-RXR heterodimer 1RDT** 20 ns 10–20 ns Inactive
PPARγ-RXR heterodimer 1RDT 20 ns 10–20 ns Active-capable
ERα monomer 1ERE 20 ns 10–20 ns Inactive
ERα dimer 1ERE 25 ns 15–25 ns Active-capable

*: All PXR simulations are based on 1ILG with residues 178–197 modeled in InsightII.

**: Single-site mutant of PPARγ generated in Pymol. There is no crystal structure of the mutant.