Table 5.
Effects of mRNA and tRNA identity on the splitting of ribosomal complexes by RRF/EF-G and IF1/IF3
| Splitting by RRF/EF-G | A1 (%) | q1 (s−1) | A2 (%) | q2 (s−1) | 
|---|---|---|---|---|
| 70S:mRNA:tRNAPhe with | ||||
| mXR7 | 85 | 1.77±0.06 | 15 | 0.33±0.03 | 
| mXR8 | 81 | 1.72±0.06 | 19 | 0.32±0.03 | 
| mXR8_FM | 78 | 1.44±0.05 | 22 | 0.33±0.04 | 
| mBar | 55 | 2.8±0.08 | 45 | 0.31±0.05 | 
| mSD022 | 65 | 1.47±0.06 | 35 | 0.29±0.04 | 
| 70S:mRNA:tRNAfMet with | ||||
| mXR7 | 88 | 0.51±0.02 | 12 | 0.12±0.03 | 
| mXR8 | 85 | 0.48±0.02 | 15 | 0.13±0.02 | 
| mXR8_FM | 47 | 0.47±0.05 | 53 | 0.18±0.03 | 
| mBar | 73 | 0.48±0.03 | 27 | 0.11±0.02 | 
| mSD022 | 71 | 0.51±0.03 | 29 | 0.15±0.03 | 
| 70S:mRNA:tRNAfMet prepared from initiation complexes with | ||||
| mXR7 | 92 | 0.54±0.02 | 8 | 0.09±0.02 | 
| mXR8 | 86 | 0.51±0.02 | 14 | 0.08±0.02 | 
| mXR8_FM | 55 | 0.41±0.04 | 45 | 0.08±0.03 | 
| mBar | 64 | 0.50±0.04 | 36 | 0.11±0.03 | 
| mSD022 | 81 | 0.48±0.03 | 19 | 0.09±0.02 | 
| Splitting by IF1/IF3 | A1 | q1 (s−1) | A2 | q2 (s−1) | 
| 70S | 81 | 0.07±0.03 | 19 | 0.03±0.005 | 
| 70S:mXR7 | 87 | 1.23±0.06 | 13 | 0.08±0.02 | 
| 70S:mXR8 | 83 | 0.81±0.05 | 17 | 0.07±0.01 | 
| 70S:mXR8_FM | 76 | 1.05±0.06 | 24 | 0.06±0.01 | 
| 70S:mBar | 59 | 0.28±0.04 | 41 | 0.05±0.02 | 
| 70S:mSD022 | 80 | 0.11±0.03 | 20 | 0.04±0.005 | 
| Parameters A1, A2, q1 and q2 were determined from nonlinear regression fit of experimental data to the relation $I(t) = A_{1} exp ( - q_{1} t) + A_{2} exp ( - q_{2} t) + A_{{{rm BKG}}} $ (Equation (10) in Materials and methods). All experiments were conducted at 37°C in LS3 buffer containing 3 mM Mg2+. | ||||