Table 2.
LD mapping results: SNPs with nominally significant p-values
| rs ID | Loc (Build 36.2) | MAF | Gene | Region | Chi-sq | p-value |
|---|---|---|---|---|---|---|
| rs1381112 | 86 366 855 | 0.125 | NTRK3 | Intron | 4.44 | 0.0351 |
| rs3825885 | 86 403 845 | 0.328 | NTRK3 | Intron | 10.70 | 0.0011 |
| rs1870736 | 86 425 625 | 0.425 | NTRK3 | Intron | 4.56 | 0.0327 |
| rs1834573 | 86 471 117 | 0.298 | NTRK3 | Intron | 5.11 | 0.0239 |
| rs8042990 | 86 532 457 | 0.318 | NTRK3 | Intron | 6.46 | 0.0110 |
| rs1530309 | 86 640 008 | 0.043 | 5.37 | 0.0204 | ||
| rs1561806 | 86 657 188 | 0.495 | 5.79 | 0.0161 | ||
| rs2028389 | 86 967 765 | 0.143 | FLJ12484 | Intron | 5.33 | 0.0209 |
| rs2072693 | 87 815 949 | 0.481 | RHCG | Exon synon | 4.45 | 0.0349 |
| rs1256840 | 88 329 016 | 0.122 | 5.71 | 0.0169 | ||
| rs1256841 | 88 349 309 | 0.121 | DKFZp547K1113 | Intron | 4.77 | 0.0290 |
| rs1867225 | 89 364 833 | 0.401 | VPS33B | Intron | 4.61 | 0.0317 |
| rs1005060 | 89 389 551 | 0.425 | 4.53 | 0.0334 | ||
| rs2597909 | 89 462 723 | 0.082 | SV2B | Intron | 4.75 | 0.0293 |
| rs4525467 | 89 840 777 | 0.398 | 8.02 | 0.0046 | ||
| rs4300626 | 89 896 689 | 0.198 | 5.65 | 0.0175 | ||
| rs4632107 | 89 941 183 | 0.334 | 7.22 | 0.0072 | ||
| rs7165398 | 90 195 099 | 0.255 | SLCO3A1 | Promoter | 6.86 | 0.0088 |
| rs1568209 | 90 382 294 | 0.467 | SLCO3A1 | Intron | 6.21 | 0.0127 |
| rs2892291 | 90 430 815 | 0.337 | SLCO3A1 | Intron | 10.71 | 0.0011 |
| rs871167 | 90 435 137 | 0.335 | SLCO3A1 | Intron | 11.13 | 0.0008 |
| rs2286355 | 90 439 197 | 0.374 | SLCO3A1 | Exon synon | 4.79 | 0.0287 |
| rs207974 | 90 439 656 | 0.256 | SLCO3A1 | Intron | 8.62 | 0.0033 |
| rs2048945 | 90 443 405 | 0.381 | SLCO3A1 | Intron | 4.90 | 0.0269 |
| rs1517620 | 90 451 267 | 0.292 | SLCO3A1 | Intron | 9.63 | 0.0019 |
| rs207964 | 90 453 177 | 0.149 | SLCO3A1 | Intron | 6.33 | 0.0119 |
| rs2238360 | 90 457 120 | 0.442 | SLCO3A1 | Intron | 4.03 | 0.0447 |
| rs732546 | 90 491 552 | 0.358 | SLCO3A1 | Intron | 4.96 | 0.0259 |
| rs2132616 | 91 039 384 | 0.407 | 4.36 | 0.0368 | ||
| rs1534780 | 91 426 217 | 0.422 | RGMA | Intron | 7.06 | 0.0079 |
| rs7180175 | 92 080 839 | 0.485 | 6.49 | 0.0109 | ||
| rs1351306 | 92 388 421 | 0.434 | 5.33 | 0.0210 | ||
| rs11853883 | 92 520 920 | 0.288 | 4.72 | 0.0298 | ||
| rs2117215 | 92 680 688 | 0.461 | MCTP2 | Intron | 5.67 | 0.0172 |
| rs2388779 | 93 058 282 | 0.288 | 3.84 | 0.0499 | ||
| rs2388881 | 93 084 371 | 0.344 | 6.48 | 0.0109 | ||
| rs2388883 | 93 122 138 | 0.193 | 6.64 | 0.0100 | ||
| rs1026453 | 93 377 084 | 0.241 | 4.48 | 0.0343 | ||
| rs4984553 | 93 444 400 | 0.275 | 5.57 | 0.0182 | ||
| rs1471169 | 93 463 523 | 0.306 | 6.56 | 0.0104 | ||
| rs1834212 | 93 876 557 | 0.403 | 4.27 | 0.0388 | ||
| rs2397813 | 93 929 511 | 0.393 | 5.75 | 0.0165 | ||
| rs766716 | 94 489 374 | 0.208 | 4.52 | 0.0336 |