Table 5.
HORs and the Corresponding Periodic Cells Identified in Build 36.1 Assembly for Different Human Chromosomes by Straightforward KSA Segmentation Using Key String CCG
| Chr. | Contig | nmer | Consensus length (bp) | Periodic cell (fragment lengths in bp) |
|---|---|---|---|---|
| 1 | NT_077389.3 | 11mer | 1866 | (180, 156, 338, 486, 63, 16, 46, 82,162, 171, 166) |
| 4 | NT_022853.14 | 13mer | 2210 | (182, 156, 36, 306, 26, 169, 169, 338, 167, 98, 252, 311) |
| 5 | NT_006713.14 | 13mer | 2214 | (314, 37, 264, 75, 62, 420, 503, 6, 334,199) |
| 7 | NT_023603.5 | 16mer | 2734 | (2213, 323, 110, 88) |
| 8 | NT_023678.15 | 11mer | 1868 | (246, 1622) |
| 10 | NT_079540.1 | 18mer | 3058 | (98, 242, 340, 339, 340, 340, 98, 278, 304,340, 269, 70) |
| 11 | NT_035158.2 | 12mer | 2047 | (34, 66, 28, 143, 143, 24, 28, 152, 15, 82, 74, 89, 73, 171, 142, 584, 199) |
| 17 | NT_024862.13 | 14mer | 2379 | (134, 204, 2041) |
| 19 | NT_011295.10 | 17mer | 2896 | (734, 19, 313, 305, 215, 70, 314, 926) |
| 19 | NT_113948.1 | 13mer | 2214 | (437, 925, 340, 131, 67, 314) |
| X | NT_011630.14 | 12mer | 2057 | (39, 314, 24, 144, 223, 117, 27, 357, 171, 167, 144, 36, 294) |