Table 5. Allele-frequencies of each of the 14 microsatellites studied for 113 strains of L. infantum MON-1 and 26 strains of non-MON-1.
Locusa | Lm2TG | TubCA | Lm4TA | Li 41-56 | Li 46-67 | Li 22-35 | Li 23-41 | Li 45-24 | Li 71-33 | Li 71-5/2 | Li 71-7 | CS20 | LIST7031 | LIST7039 | ||||||||||||||
Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | Allele | FA | |
[bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | [bp] | |||||||||||||||
non-MON-1b | 116 | 5.8 | 80 | 67.3 | 73 | 13.5 | 88 | 3.8 | 74 | 38.5 | 80 | 1.9 | 83 | 40.4 | 89 | 3.8 | 105 | 67.3 | 106 | 84.6 | 90 | 1.9 | 83 | 21.1 | 109 | 38.5 | 207 | 44.2 |
122 | 32.7 | 82 | 3.8 | 75 | 65.4 | 92 | 11.6 | 76 | 11.5 | 92 | 5.8 | 85 | 13.4 | 107 | 3.8 | 107 | 1.9 | 108 | 3.8 | 92 | 3.9 | 85 | 15.4 | 111 | 57.7 | 209 | 3.9 | |
124 | 5.8 | 84 | 13.5 | 77 | 17.3 | 94 | 80.8 | 78 | 34.6 | 100 | 1.9 | 87 | 5.8 | 109 | 55.9 | 109 | 7.7 | 110 | 11.6 | 96 | 11.5 | 87 | 40.4 | 113 | 3.8 | 211 | 19.2 | |
134 | 11.5 | 86 | 11.6 | 83 | 3.8 | 96 | 3.8 | 80 | 15.4 | 102 | 5.8 | 89 | 5.8 | 111 | 3.8 | 111 | 9.6 | 98 | 67.3 | 89 | 17.3 | 213 | 11.6 | |||||
136 | 5.8 | 94 | 3.8 | 104 | 13.5 | 91 | 17.3 | 113 | 17.3 | 113 | 7.7 | 100 | 15.4 | 91 | 5.8 | 215 | 19.2 | |||||||||||
138 | 9.6 | 106 | 11.5 | 93 | 3.8 | 115 | 15.4 | 133 | 3.9 | 217 | 1.9 | |||||||||||||||||
140 | 1.9 | 108 | 7.7 | 95 | 7.7 | 137 | 1.9 | |||||||||||||||||||||
142 | 1.9 | 112 | 3.8 | 99 | 5.8 | |||||||||||||||||||||||
146 | 5.8 | 114 | 3.8 | |||||||||||||||||||||||||
148 | 3.8 | 118 | 1.9 | |||||||||||||||||||||||||
150 | 15.4 | 120 | 5.8 | |||||||||||||||||||||||||
122 | 28.9 | |||||||||||||||||||||||||||
124 | 7.7 | |||||||||||||||||||||||||||
MON-1 totalb | 116 | 0.4 | 80 | 99.1 | 63 | 0.9 | 88 | 8.0 | 74 | 0.9 | 88 | 0.9 | 67 | 0.9 | 101 | 0.9 | 105 | 97.3 | 108 | 7.1 | 98 | 7.5 | 81 | 0.9 | 109 | 7.1 | 205 | 8.0 |
122 | 0.9 | 88 | 0.9 | 73 | 0.9 | 90 | 91.6 | 80 | 99.1 | 90 | 16.4 | 81 | 0.4 | 103 | 6.2 | 107 | 2.7 | 110 | 82.8 | 100 | 92.0 | 83 | 79.5 | 111 | 79.0 | 207 | 91.1 | |
126 | 2.2 | 75 | 17.9 | 94 | 0.4 | 92 | 24.3 | 83 | 12.0 | 105 | 67.7 | 112 | 9.1 | 102 | 0.5 | 85 | 19.6 | 113 | 13.9 | 211 | 0.9 | |||||||
136 | 0.9 | 77 | 15.2 | 94 | 47.4 | 85 | 83.2 | 107 | 17.2 | 124 | 1.0 | |||||||||||||||||
138 | 24.5 | 79 | 38.8 | 96 | 0.4 | 87 | 3.5 | 109 | 7.1 | |||||||||||||||||||
140 | 10.3 | 81 | 15.6 | 98 | 4.0 | 119 | 0.9 | |||||||||||||||||||||
142 | 29.5 | 83 | 6.7 | 100 | 1.3 | |||||||||||||||||||||||
144 | 29.5 | 85 | 0.9 | 102 | 0.9 | |||||||||||||||||||||||
146 | 1.8 | 87 | 3.1 | 104 | 1.3 | |||||||||||||||||||||||
MON-1 Populationb | ||||||||||||||||||||||||||||
Greece, | 122 | 4.8 | 80 | 95.5 | 63 | 4.6 | 88 | 40.9 | 80 | 100.0 | 92 | 65.9 | 81 | 2.3 | 101 | 4.6 | 105 | 100.0 | 108 | 11.1 | 98 | 20.5 | 83 | 9.5 | 109 | 14.3 | 207 | 100.0 |
Turkey, | 136 | 4.8 | 88 | 4.5 | 77 | 50.0 | 90 | 59.1 | 98 | 20.5 | 83 | 25.0 | 103 | 22.7 | 110 | 27.8 | 100 | 79.5 | 85 | 90.5 | 111 | 85.7 | ||||||
Tunisia, | 138 | 4.8 | 79 | 9.1 | 100 | 6.8 | 85 | 63.6 | 107 | 72.7 | 112 | 50.0 | ||||||||||||||||
Israel | 140 | 9.5 | 81 | 13.6 | 104 | 6.8 | 87 | 9.1 | 124 | 11.1 | ||||||||||||||||||
142 | 21.4 | 83 | 18.2 | |||||||||||||||||||||||||
144 | 54.7 | 85 | 4.5 | |||||||||||||||||||||||||
Islands Spain | 138 | 79.7 | 80 | 100.0 | 75 | 48.5 | 90 | 100.0 | 74 | 3.1 | 88 | 3.1 | 67 | 3.1 | 105 | 67.2 | 105 | 97.0 | 110 | 96.9 | 98 | 3.1 | 83 | 100.0 | 109 | 4.7 | 207 | 96.9 |
Majorca+Ibiza | 140 | 3.1 | 77 | 6.4 | 80 | 96.9 | 90 | 53.1 | 83 | 3.1 | 107 | 7.8 | 107 | 3.0 | 112 | 3.1 | 100 | 95.3 | 111 | 46.9 | 211 | 3.1 | ||||||
142 | 17.2 | 79 | 3.2 | 92 | 28.2 | 85 | 90.7 | 109 | 25.0 | 102 | 1.6 | 113 | 48.4 | |||||||||||||||
81 | 25.8 | 94 | 3.1 | 87 | 3.1 | |||||||||||||||||||||||
83 | 4.8 | 102 | 3.1 | |||||||||||||||||||||||||
87 | 11.3 | 118 | 9.4 | |||||||||||||||||||||||||
Portugal+ | 116 | 0.9 | 80 | 100.0 | 73 | 1.7 | 90 | 99.1 | 80 | 100.0 | 90 | 2.5 | 83 | 11.9 | 103 | 3.4 | 105 | 97.0 | 108 | 10.3 | 98 | 5.1 | 81 | 1.7 | 109 | 5.9 | 205 | 15.2 |
Spain | 126 | 4.2 | 75 | 8.5 | 94 | 0.9 | 92 | 6.7 | 85 | 86.4 | 105 | 93.2 | 107 | 3.0 | 110 | 83.6 | 100 | 94.9 | 83 | 93.2 | 111 | 94.1 | 207 | 84.8 | ||||
mainland | 138 | 1.7 | 77 | 6.8 | 94 | 89.0 | 87 | 1.7 | 107 | 1.7 | 112 | 6.1 | 85 | 5.1 | ||||||||||||||
140 | 14.4 | 79 | 68.6 | 96 | 0.9 | 119 | 1.7 | |||||||||||||||||||||
142 | 39.0 | 81 | 11.0 | 118 | 0.9 | |||||||||||||||||||||||
144 | 36.4 | 83 | 3.4 | |||||||||||||||||||||||||
146 | 3.4 |
Prominent alleles (>10%) are marked as bold numbers.
Two strains of mixed MON-1/non-MON-1 alleles have been excluded (INF-32 and PT2(I)). For ES9(III) and ES10(III) only the non-MON-1 genotype has been considered, as these strains have been identified as MON-24 by MLEE.