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. 2008 Mar 28;95(2):550–562. doi: 10.1529/biophysj.107.127621

FIGURE 2.

FIGURE 2

(A) The MM/GBSA binding free energies as a function of simulation run obtained from 500 flexible docking simulations. (B) The RMSD values of the docked conformations are reported in the reference to the lowest energy structure of the p-S8 inhibitor corresponding to the folding mode of inhibition and reflect two structural clusters of low-energy docking solutions.