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Comparison among the BLAST, NNA, and ECOC algorithm
| Target | BLAST | NNA | ECOC |
| Success rate | Success rate | Success rate | |
| basic-TF | 25/37 = 67.57% | 34/37 = 91.89% | 36/37 = 97.30% |
| zinc-TF | 29/33 = 87.88% | 31/33 = 93.94% | 32/33 = 96.97% |
| helix-TF | 33/36 = 91.67% | 34/36 = 94.44% | 35/36 = 97.22% |
| beta-TF | 27/32 = 84.38% | 28/32 = 87.50% | 32/32 = 100.00% |
| Overall | 114/138 = 82.61% | 127/138 = 92.03% | 135/138 = 97.83% |
