Table 1.
Developmental dissection of developmentally regulated genes in Pima and TM1 fiber transcriptomes revealed species- and stage-specific clusters.
| Data sets | No. of genes (%) | No. of clusters | Stage specific clusters (genes) | Description (%) |
| Pima developmentally regulated profile | 2943 (24.39) | 10 | 1 (323), 5 (239) | Up1 during PCW synthesis only (4.65) |
| 2 (232), 9 (209) | Up1 during SCW deposition only (3.65) | |||
| 4 (399) | Up1 in PCW and SCW (3.31) | |||
| 3(493), 6(588), 8 (217) | Down2 in PCW and SCW (10.76) | |||
| 7 (77), 10 (86), | Oscillating (1.35) | |||
| TM1 developmentally regulated profile | 2281 (18.90) | 8 | 5 (234), 8 (122) | Up1 during PCW synthesis only (2.95) |
| 6 (160), 7 (400) | Up1 during SCW deposition only (4.64) | |||
| 1 (353) | Up1 in PCW and SCW (2.92) | |||
| 2(392), 3(517), 4 (103) | Down2 in PCW and SCW (8.38) | |||
| Top differentially expressed genes between Pima and TM1 profiles of fiber transcriptome | 1167 (9.67) | 2 | 1 (465) | Pima specific pattern (3.85) |
| 2 (702) | TM1 specific pattern (5.81) | |||
1 Up-regulated, 2 Down-regulated; All percentages in this table were calculated relative to the total number of profiled genes (12063 after filtration) in this study