Table 1.
Functional analysis of genes obtained by bootstrapped BGA, bootstrapped CA and ANOVA
| Functional category of genes | Benjamini-Hochberg adjusted p-values | ||
| Bootstrapped BGA | Bootstrapped CA | ANOVA | |
| Response to stress | 24% (p = 0.01) | 18% (p = 0.04) | 17% (p = 0.76) |
| Defense response | 25% (p < 0.01) | 16% (p = 0.38) | 15% (p = 0.85) |
| Immune response | 24% (p < 0.01) | 15% (p = 0.39) | 13% (p = 0.95) |
| Humoral immune response | 11% (p < 0.01) | 4% (p = 0.99) | 5% (p = 0.85) |
| Response to biotic stimulus | 25% (p < 0.01) | 16% (p = 0.48) | 16% (p = 0.79) |
| Response to stimulus | 37% (p = 0.01) | 24% (p = 0.62) | 26% (p = 0.79) |
| Response to pest, pathogen or parasite | 16% (p = 0.01) | 12% (p = 0.09) | 11% (p = 0.98) |
| Response to other organism | 16% (p = 0.02) | 12% (p = 0.10) | 11% (p = 0.95) |
| Gas transport | 5% (p = 0.03) | 0% (NS) | 3% (p = 0.82) |
| Oxygen transport | 5% (p = 0.03) | 0% (NS) | 3% (p = 0.82) |
| Humoral defense mechanism | 8% (p = 0.05) | 0% (NS) | 5% (p = 0.97) |
The Gene Ontology analysis is based on the 11 most significant GO categories (adjusted p-values < 0.05) obtained after bootstrapped BGA. The results present the proportion of genes that belong to these GO categories (%) and the enrichment significance (p-values are adjusted using the Benjamini-Hochberg method [30]), after bootstrapped BGA, bootstrapped CA and ANOVA.