Table 3.
Oligonucleotide | Tm (unmodified) | ΔTm |
---|---|---|
5′-TCGTT-OPdA-TTGCT-3′ (12) 5′-AGCAA——T——AACGA-5′ | 46° C (43° C) | 3° C |
5′-CAGTC-OpdA-CTAGA-3′ (13) 3′-GTCAG T——GATCT-5′ | 44° C (44° C) | 0° C |
5′-CAGTG-OPdA-GTAGA-3′ (14) 3′-GTCAC T——CATCT-5′ | 46° C (45° C) | 1° C |
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT——T——TTTTGTACC-5′ | 55° C (56° C) | −1° C |
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT—————TTTTGTACC-5′ | 51° C (50° C) | 1° C |
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT—————TTTGTACC-5′ | 48° C (47° C) | 1° C |
Conditions: 100 mM NaCl, 10 mM, pH 7 sodium phosphate, 50 μM EDTA, 0.5 A260/mL of each oligonucleotide. The temperature was raised 1° C/min.