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. Author manuscript; available in PMC: 2008 Jun 28.
Published in final edited form as: Chem Res Toxicol. 2006 Nov;19(11):1467–1474. doi: 10.1021/tx060137o

Table 3.

Thermal melting temperatures (Tm) of OPdA-modified oligonucleotidesa

Oligonucleotide Tm (unmodified) ΔTm
5′-TCGTT-OPdA-TTGCT-3′ (12) 5′-AGCAA——T——AACGA-5′ 46° C (43° C) 3° C
5′-CAGTC-OpdA-CTAGA-3′ (13) 3′-GTCAG T——GATCT-5′ 44° C (44° C) 0° C
5′-CAGTG-OPdA-GTAGA-3′ (14) 3′-GTCAC T——CATCT-5′ 46° C (45° C) 1° C
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT——T——TTTTGTACC-5′ 55° C (56° C) −1° C
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT—————TTTTGTACC-5′ 51° C (50° C) 1° C
5′-GCAAAAA-OPdA-AAAACATGG-3′ (15) 3′-CGTTTTT—————TTTGTACC-5′ 48° C (47° C) 1° C
a

Conditions: 100 mM NaCl, 10 mM, pH 7 sodium phosphate, 50 μM EDTA, 0.5 A260/mL of each oligonucleotide. The temperature was raised 1° C/min.