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. 2008 May 17;36(11):e65. doi: 10.1093/nar/gkn299

Table 2.

Oligonucleotide sequences for IL-8 HP with different stem-loop structures

Designation Sequence (5′ to 3′) Stem (bp) Loop (nt) Duplex (bp)
IL-8 HPS1a,b,c GAG GGT TGT GAT GAA TTC TCA GCC CTC TTC AAA AAC TTC TCC ACA ACC CTC 10 31 41
IL-8 HPS2a,b,c GAG GGT TGC TCA GCC CTC TTC AAA AAC TTC TCC ACA ACC CTC 8 26 34
IL-8 HPS3a,b,c GAG GGT CTC TTC AAA AAC TTC TCC ACA ACC CTC 6 21 27

aAll the probes were double labeled with 5′-biotin and 3′-fluorescein.

bHairpin probe design was calculated by MFold free web server (27,28).

cThe target recognition sequences are listed in italic font. The stem sections of the hairpins are underlined.