Figure 1.

Proportion of repetitive and low-copy sequences in the MF and WGS libraries. A: Proportion of all low-copy sequences (transcribed, gene-like and anonymous) are shown together (LC). Proportion of all repeats (All Rpts) and their break down into known (Known Rpts) and de novo repeats (de novo Rpts) are shown separately. The percentage of chloroplast (Chlor) sequences is calculated relative to the total number of sequences in each library. All the other percentages are calculated relative tot the total of non-chloroplast reads in each library. B: Percentages of MF and WGS reads matching the reference genome, classified by the number of hits. Any read showing 20 or more hits in the reference genome is considered a de novo identified repeat.