Table 3.
Conserved gene clusters in the genomes of Mic-PCC7806, Cwa-WH8501 and Syn-PCC6803
| Cluster 1 = Phosphate transport system | ||||||||
| Gene name | sphX | pstS | pstC | pstA | pstB1 | pstB2 | ||
| Mic-PCC7806 contig328 | mic3546 | mic3547 | mic3548 | mic3549 | mic3550 | mic3552 | ||
| Cwa-WH8501 contig3 | EAM51827.1 | EAM51828.1 | EAM51829.1 | EAM51831.1 | EAM51832.1 | EAM51833.1 | ||
| Syn-PCC6803 | sll0679 | sll0680 | sll0681 | sll0682 | sll0683 | sll0684 | ||
| Gene annotation | periplasmic phosphate-binding protein of ABC transporter | phosphate-binding periplasmic protein precursor | phosphate transport system permease protein | phosphate transport system permease protein | phosphate transport ATP-binding protein | phosphate transport ATP-binding protein | ||
| Cluster 2 = Ci-concentrating mechanism | ||||||||
| Gene name | ccmK2 | ccmk1 | ccmL | ccmM | ccmN | |||
| Mic-PCC7806 contig303 | mic5495 | mic5496 | mic6196 | mic5695 | mic5233 | |||
| Cwa-WH8501 contig2 | EAM52133.1 | EAM52134.1 | EAM52135.1 | EAM52136.1 | EAM52137.1 | |||
| Syn-PCC6803 | sll1028 | sll1029 | sll1030 | sll1031 | sll1032 | |||
| Gene annotation | carbon dioxide concentrating mechanism protein | carbon dioxide concentrating mechanism protein | putative carboxysome assembly protein | putative carboxysome structural protein | putative carboxysome assembly protein | |||
| Cluster 3 = Unassigned function | ||||||||
| Gene name | yidC | rnpA | ||||||
| Mic-PCC7806 contig303 | mic5398 | mic5399 | mic5400 | mic6364 | ||||
| Cwa-WH8501 contig2 | EAM51643.1 | EAM51642.1 | EAM51641.1 | EAM51640.1 | ||||
| Syn-PCC6803 | slr1472 | slr1471 | slr1470 | slr1469 | ||||
| Gene annotation | COG1847 Predicted RNA-binding protein | COG0706 Preprotein translocase subunit | No similarity; highly conserved in cyanobacteria | protein subunit of ribonuclease P | ||||
| Cluster 4 = ATP synthase | ||||||||
| Gene name/Alternate gene name | atpC | atpA | atpH/atpD | atpF | atpG | atpE/atpH | atpB/atpI | atpI |
| Mic-PCC7806 contig290 | mic4443 | mic4444 | mic4445 | mic4446 | mic4447 | mic4448 | mic4449 | mic4451 |
| Cwa-WH8501 contig1 | EAM53207.1 | EAM53206.1 | EAM53205.1 | EAM53204.1 | EAM53203.1 | EAM53202.1 | EAM53201.1 | EAM53200.1 |
| Syn-PCC6803 | sll1327 | sll1326 | sll1325 | sll1324 | sll1323 | ssl2615 | sll1322 | sll1321 |
| Gene annotation | ATP synthase gamma chain | ATP synthase alpha chain | ATP synthase delta chain of CF(1) | ATP synthase B chain (subunit I) of CF(0) | ATP synthase of B' chain (subunit b') of CF(0) | ATP synthase C chain of CF(0) | ATP synthase A chain | ATP synthase protein I |
For each of the three genomes, the gene identifiers are indicated in italics. See the Methods section for the strain identifiers.