Table 3.
Percentage of perfectly aligned queries.
| BLAT | Exnrt. | BLAT | Exnrt. | ||
| Species | Scipio (automatic assembling) | with manual assembling | without assembling | ||
| Bombyx mori p50T | 25.0 | 0.0 | 25.0 | 0.0 | 12.5 |
| Drosophila simulans | 37.8 | 2.7 | 21.6 | 2.7 | 16.2 |
| Bombyx mori str. Dazao | 15.6 | 3.1 | 12.5 | 0.0 | 9.4 |
| Nasonia vitripennis (contigs) | 71.4 | 11.4 | 57.1 | 11.4 | 54.3 |
| Nasonia vitripennis (scaffolds) | 68.6 | 11.4 | 65.7 | 11.4 | 65.7 |
| Drosophila sechellia | 63.2 | 7.9 | 55.3 | 2.6 | 55.3 |
| Aedes aegypti | 87.5 | 7.5 | 52.5 | 7.5 | 50.0 |
| Daphnia pulex | 88.1 | 0.0 | 76.2 | 0.0 | 76.2 |
| Anopheles gambiae | 94.6 | 8.1 | 73.0 | 8.1 | 73.0 |
| Drosophila melanogaster | 100.0 | 10.5 | 86.8 | 10.5 | 86.8 |
| Aspergillus niger | 86.7 | 6.7 | 73.3 | 6.7 | 73.3 |
| Homo sapiens | 62.5 | 0.0 | 50.0 | 0.0 | 50.0 |
| Macaca mulatta | 12.5 | 0.0 | 10.0 | 0.0 | 10.0 |
| total | 64.5 | 5.5 | 51.7 | 4.8 | 50.3 |
The number of query sequences that were predicted by the programs exactly at the correct location, with 100 % matching residues, without frameshifts or false positives. This figure reveals the amount of workload needed for manual postprocessing of the hits.