Table III.
Posterior estimates of true pig-level prevalence (%) and herd-level prevalence (%) of Toxoplasma gondii in Ontario 2001, 2003, and 2004 and for coefficients of random effect logistic regression model
Node | Mean | 2.5 pa | Median | 97.5 pa | Prior |
---|---|---|---|---|---|
Tests | |||||
Test sensitivity | 85.28 | 73.73 | 85.79 | 93.94 | Beta (44.5, 6.6) |
Test specificity | 99.88 | 99.75 | 99.89 | 99.96 | Beta (159.1, 4.2) |
Logistic regression model (LRM) | |||||
Intercept | −6.22 | −7.17 | −6.21 | −5.35 | N (0,1) |
Presence of cats | 0.23 | −0.85 | 0.24 | 1.26 | N (0,1) |
Year 2003 | −2.00 | −3.36 | −1.98 | −0.75 | N (0,1) |
Year 2004 | −1.47 | −2.78 | −1.45 | −0.26 | N (0,1) |
Herd (random) | 2.15e | 1.68e | 2.13e | 2.73e | N [0, Gamma(1,25)]d |
Prevalence | |||||
Pig true prevalence in 2001 | 1.69 | 1.22 | 1.67 | 2.25 | (LRM) |
Pig true prevalence in 2003 | 0.19 | 0.04 | 0.17 | 0.45 | (LRM) |
Pig true prevalence in 2004 | 0.33 | 0.10 | 0.31 | 0.69 | (LRM) |
Herdb prevalence in 2001 | 11.28 | 7.37 | 11.58 | 16.84 | (LRM) |
Herdb prevalence in 2003 | 0.52 | 0.00 | 0.00 | 2.50 | (LRM) |
Herdb prevalence in 2004 | 1.54 | 0.00 | 1.25 | 5.00 | (LRM) |
Herdc prevalence in 2001 | 5.84 | 3.16 | 6.32 | 8.42 | (LRM) |
Herdc prevalence in 2003 | 0.05 | 0.00 | 0.00 | 1.25 | (LRM) |
Herdc prevalence in 2004 | 0.33 | 0.00 | 0.00 | 1.25 | (LRM) |
N — Normal distribution; LRM — logistic regression model.
p — percentile.
Based on ≥ 1 as a herd cut-off.
Based on ≥ 2 as a herd cut-off.
Specified in a form as required by WinBugs (as precision, not as standard deviation).
Specified as standard deviation.