Table 3.
Databases for transcription factors available on the internet.
| Databse name | Description | URL |
|---|---|---|
| ACTIVITY | Functional DNA/RNA site activity | http://wwwmgs.bionet.nsc.ru/mgs/systems/activity/ |
| DoOP | Database of orthologous promoters: chordates and plants | http://doop.abc.hu/ |
| EPD | Eukaryotic promoter database | http://www.epd.isb-sib.ch/ |
| JASPAR | PSSMs for transcription factor DNA-binding sites | http://jaspar.cgb.ki.se/ |
| MAPPER | Putative transcription factor binding sites in various genomes | http://bio.chip.org/mapper |
| TESS | Transcription element search system | http://www.cbil.upenn.edu/tess/ |
| TRANSCompel | Composite regulatory elements affecting gene transcription in eukaryotes | http://www.gene-regulation.com/pub/databases.html#transcompel |
| TRED | Transcriptional regulatory element database | http://rulai.cshl.edu/tred/ |
| TRRD | Transcription regulatory regions of eukaryotic genes | http://www.bionet.nsc.ru/trrd/ |
| AthaMap | Genome-wide map of putative transcription factor binding sites in Arabidopsis thaliana | http://www.athamap.de/ |
| DATF | Database of Arabidopsis transcription factors | http://datf.cbi.pku.edu.cn/ |