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. Author manuscript; available in PMC: 2009 May 1.
Published in final edited form as: Biochim Biophys Acta. 2008 Mar 14;1777(5):441–452. doi: 10.1016/j.bbabio.2008.03.001

Table 4.

QCFF/PI-EVB energetics of the ion pair statesa

System ΔΔGsolwp(I)b pKa (SBH+) b ΔΔGsolwp(II)c Δ GPTd
water 7.0 6.5
bR 13.0 16.4 2.2 7.7
K 11.0 15.0 3.0 8.2
L 9.0 13.5 1.8 6.3
M1 11.0 15.0 2.0 5.8
M2 7.0 12.1 − 14.0 − 4.0
M2′ 4.0 9.9 − 17.0 − 6.0
M22 7.0 12.1 − 18.0 − 7.0
a

Microscopic free energies in kcal/mol, where R82 and D212 are ionized, Asp85 is designated by A in the equations below.

b

ΔΔGsolwp(I)=ΔΔGsolwp(SBH+,ASBHnp,A) is the change in the solvation of the Schiff base upon moving from solution to the protein site. The corresponding absolute pKa (when D85 is ionized) is given in pKa units.

c

ΔΔGsolwp(II)=ΔΔGsolwp(SBH+,ASBHnp,Anp), where the ion pair is held at the same distance in water and in the protein.

d

ΔGPT is evaluated by, ΔGPTp=ΔGPTw()ΔVQQip/20+ΔVQQpolar/4+ΔΔGsolwp(II)+ΔΔGsolwp(III), where ΔΔVQQip is the gas-phase interaction within the ion pair and ΔΔGsolwp(III)=ΔΔGsolwp(SBnp,AHnpSBpo,AHpo).