TABLE 3.
Predicted promoters in the RA3 sequencea
| Locus | −35 motif (coordinates) | Spacer size (bp) | −10 motif (coordinates) |
|---|---|---|---|
| repB | TTGGCG (45762-45767) | 17 | TAAATT (45785-45790) |
| RA3.02 | TTGCCA (2168-2173) | 18 | TATAAT (2192-2197) |
| klcA | TTGACA (2558-2563) | 18 | TATTAT (2582-2587) |
| korC | TTGAGG (3175-3180) | 20 | TATTGT (3201-3206) |
| kfrA | TTGTAT (4829-4834) | 18 | TAAAAT (4853-4858) |
| korA | TTGACG (5967-5972) | 16 | TATCTT (5989-5994) |
| mpR | TGGCTC (9641-9646c) | 12 | TAACTT (9623-9628c) |
| mobC | TTGCTA (9761-9766) | 16 | TAAAAT (9787-9792) |
| RA3.33 | TGTCCA (31079-31084c) | 17 | TATATT (31056-31061c) |
| RA3.34 | TGGCCT (31136-31141) | 18 | TACCAT (31160-31165) |
| rec | TCCCCG (32958-32964c) | 18 | TAAAAT (32935-32940c) |
| tnp513 | CTGATA (39994-39999c) | 16 | TATTGT (39972-39977c) |
| aadA2 | TGGACA (42590-42595c) | 17 | TAAACT (42567-42572c) |
| int1 | TTGCTG (42425-42430) | 17 | TAGACT (42448-42453) |
| res | TTGCGC (44457-44472c) | 17 | TAAGAT (44444-44449c) |
| repA | TTGTTG (45379-45384) | 17 | TACACT (45402-45407) |
| repX | TTGCCA (45886-45891c) | 16 | TATAAT (45864-45869c) |
a
The putative −35 and −10 motifs are accompanied by the sequence coordinates in plasmid RA3 (DQ401103). The letter c follows the coordinates of promoters on the complementary strand.