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. 2008 Apr 25;74(12):3795–3803. doi: 10.1128/AEM.00049-08

TABLE 2.

Distribution over time of the 25 different 16S rRNA gene sequences obtained from cultivable bacteria following SSMS preincubation

Isolate or parameter Bacterial phyluma Sampleb from 35-55 cm on day:
Sampleb from 80-100 cm on day:
7 14 21 28 7 14 21 28
SEQ 1 CFB + + +
SEQ 2 CFB + +
SEQ 3 CFB
SEQ 4 Betaproteobacteria + + + + +
SEQ 5 Betaproteobacteria + + + + + + +
SEQ 6 Betaproteobacteria + +
SEQ 7 Betaproteobacteria
SEQ 8 Betaproteobacteria
SEQ 9 Betaproteobacteria + +
SEQ 10 Betaproteobacteria
SEQ 11 Betaproteobacteria
SEQ 12 Betaproteobacteria + + +
SEQ 13 Betaproteobacteria + + +
SEQ 14 Betaproteobacteria + + + + + +
SEQ 15 Betaproteobacteria
SEQ 16 Betaproteobacteria
SEQ 17 Betaproteobacteria + + + +
SEQ 18 Gammaproteobacteria
SEQ 19 Gammaproteobacteria + +
SEQ 20 Gammaproteobacteria
SEQ 21 Alphaproteobacteria
SEQ 22 Firmicutes
SEQ 23 Actinobacteria + + + + +
SEQ 24 Actinobacteria + +
SEQ 25 Actinobacteria + +
No. of sequences 8 3 8 12 3 7 11 7
No. of 1st appearances 8 2 2 5 3 6 6 1
a

CFB, Cytophaga-Flavobacterium-Bacteroidetes. Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria are subphyla of Proteobacteria.

b

+, presence of a specific sequence; −, unique sequence not seen at another sampling time.