TABLE 1.
List of Xylella fastidiosa isolates used in this study, including cluster assignment based on MLST and microsatellite data
| Isolate | Host of origin | Genetic clustera according to:
|
City and stateb | Collector | ||
|---|---|---|---|---|---|---|
| MLST | Microsatellite analysis
|
|||||
| STRUCTURAMA | STRUCTURE | |||||
| 10 | Citrus | 1 | 1 | 1 | Pedregulho, SP | S. Lopes |
| 11 | Citrus | 1 | 1 | 1 | Pedregulho, SP | S. Lopes |
| 34 | Citrus | 1 | 1 | 1 | Araras, SP | J. Lopes |
| 35 | Citrus | 1 | 1 | 1 | Com. Gomes, MG | J. Lopes |
| 36 | Citrus | 1 | 1 | 1 | Matão, SP | S. Lopes |
| 37 | Citrus | 1 | 1 | 1 | Matão, SP | S. Lopes |
| 41 | Citrus | 1 | 1 | 1 | Taquaritinga, SP | J. Lopes |
| 42 | Citrus | 1 | 1 | 1 | Taquaritinga, SP | J. Lopes |
| 44 | Citrus | 1 | 1 | 1 | Ubirajara, SP | J. Lopes |
| 45 | Citrus | 1 | 1 | 1 | Gavião Peixoto, SP | R. Marques |
| 46 | Citrus | 1 | 1 | 1 | Gavião Peixoto, SP | R. Marques |
| 53 | Citrus | 1 | 1 | 1 | Com. Gomes, MG | R. Marques |
| 54 | Citrus | 1 | 1 | 1 | Frutal, SP | R. Marques |
| 55 | Citrus | 1 | 1 | 1 | Frutal, SP | R. Marques |
| 64 | Citrus | 1 | 1 | 1 | Rio Real, BA | F. Laranjeira |
| 65 | Citrus | 1 | 1 | 1 | Itapirucu, BA | F. Laranjeira |
| 6570 | Citrus | 1 | 1 | 1 | Bebedouro, SP | J. Lopes |
| 66 | Citrus | 1 | 1 | 1 | Rio Real, BA | F. Laranjeira |
| 67 | Citrus | 1 | 1 | 1 | Itapirucu, BA | F. Laranjeira |
| 84 | Citrus | 1 | 1 | 1 | Botucatu, SP | P. Paiva |
| 85 | Citrus | 1 | 1 | 1 | Itajú, SP | P. Paiva |
| 47 | Citrus | 1 | 1 | 2 | Gavião Peixoto, SP | R. Marques |
| 18 | Citrus | 2 | 2 | 2 | Neves Paulista, SP | S. Lopes |
| 86 | Citrus | 2 | 2 | 2 | São Carlos, SP | P. Paiva |
| 88 | Citrus | 2 | 2 | 2 | Cafelândia, SP | P. Paiva |
| 9a5c | Citrus | 2 | 2 | 2 | Macaubal, SP | Reference 7 |
| 29 | Coffee | 3 | 3 | 3 | Garça, SP | J. Lopes |
| 51 | Coffee | 3 | 3 | 3 | Lavras, MG | M. Bento |
| 1 | Coffee | 4 | 3 | 3 | Ribeirão Preto, SP | S. Lopes |
| 3124 | Coffee | 4 | 3 | 3 | Matão, SP | W. Li |
| 4 | Coffee | 4 | 3 | 3 | Cravinhos, SP | S. Lopes |
| 50 | Coffee | 4 | 3 | 3 | Lavras, MG | M. Bento |
| 56 | Coffee | 4 | 3 | 3 | Planaltina, DF | C. Oliveira |
| 57 | Coffee | 4 | 3 | 2 | Planaltina, DF | C. Oliveira |
| 58 | Coffee | 4 | 3 | 2 | Planaltina, DF | C. Oliveira |
| 59 | Coffee | 4 | 3 | 3 | Planaltina, DF | C. Oliveira |
| 61 | Coffee | 4 | 3 | 3 | Planaltina, DF | C. Oliveira |
| 62 | Coffee | 4 | 3 | 2 | Planaltina, DF | C. Oliveira |
| 6756 | Coffee | 4 | 3 | 3 | Matão, SP | R. Almeida |
| 73 | Coffee | 4 | 3 | 2 | São Gotardo, MG | L. Zambolim |
| 80 | Coffee | 4 | 3 | 2 | São Gotardo, MG | L. Zambolim |
| 32 | Coffee | 5 | 3 | 3 | Muritinga Sul, SP | J. Ottoboni |
| 68 | Coffee | 6 | 2 | 2 | São Gotardo, MG | L. Zambolim |
| 8 | Coffee | 7 | 2 | 3 | Pedregulho, SP | S. Lopes |
| 24 | Coffee | 7 | 3 | 2 | Garça, SP | J. Lopes |
| 33 | Coffee | 7 | 3 | 2 | Varginha, MG | S. Lopes |
a
See text for cluster assignment using different methods.
b
State abbreviations: BA, Bahia; DF, Distrito Federal; MG, Minas Gerais; SP, Sao Paulo.