TABLE 3.
SNP profiles of strains
| Cladea or strain | SNP profileb
|
Strain(s)c | |||
|---|---|---|---|---|---|
| 539 (C/A) | 1060 (G/C) | 438 (C/T) | 630 (C/T) | ||
| 1 | C | C* | T* | T* | Sakai (TW08264), EK4 (TW08612), MLVA-24 (TW10022) |
| 2 | C | G | T* | T* | 93-111 (TW04863), MLVA-47 (TW10045), MI04-43 (TW11110), 96M1006 (TW11308) |
| 3 | C | G | C | T* | EDL932 (TW02299), EDL933 (TW02302), MLVA-10 (TW10008), MLVA-26 (TW10024) |
| 4 | C | G | C | C | MI02-53 (TW11039) |
| 5 | C | G | C | C | MI02-99 (TW11116) |
| 6 | C | G | C | C | MI03-48 (TW09109) |
| 7 | C | G | C | C | MI03-9 (TW09178) |
| 8 | A* | G | C | C | E32511 (TW02883), MI06-31 (TW14313), MI06-63 (TW14359), 64645 (TW14585), 64086 (TW14586) |
| 9 | C | G | C | C | 2664/91 (TW07763) |
| K-12 | C | G | C | C | MG1655 |
a
Based on the work of Manning et al. (8).
b
The SNP profile associated with the respective clade. The SNP is described in terms of the nucleotide position within the ORF, and the polymorphism is given in parentheses. Asterisks denote diagnostic SNPs.
c
All strains were acquired from the collection of the STEC Center at Michigan State University.