TABLE 2.
Sequencing ends of M. balbisiana cv. PKW BAC clones hybridizing with BSGfV probe
BAC clone | Probe | Primer | Sequence length (bp) | BLASTN
|
BLASTX
|
||
---|---|---|---|---|---|---|---|
Result | E value | Result | E value | ||||
30-F18 | BSGfV | Forward | 519 | Oryza sativa genomic DNA, chromosome 1 | 1e.09 | WAK-like kinase (Arabidopsis thaliana) | 2e.40 |
30-F18 | BSGfV | Reverse | 372 | No significant similarity found | No significant similarity found | ||
64-H02 | BSGfV | Forward | 456 | No significant similarity found | No significant similarity found | ||
64-H02 | BSGfV | Reverse | 458 | No significant similarity found | No significant similarity found | ||
71-C19 | BSGfV | Forward | 644 | No significant similarity found | No significant similarity found | ||
71-C19 | BSGfV | Reverse | 436 | No significant similarity found | No significant similarity found | ||
96-J15 | BSGfV | Forward | 676 | No significant similarity found | No significant similarity found | ||
96-J15 | BSGfV | Reverse | 346 | No significant similarity found | No significant similarity found | ||
41-K09 | BSGfV | Forward | 922 | No significant similarity found | No significant similarity found | ||
41-K09 | BSGfV | Reverse | 734 | No significant similarity found | No significant similarity found | ||
48-D15 | BSGfV | Forward | 781 | No significant similarity found | Hypothetical protein At2g28370 (Arabidopsis thaliana) | 9e.07 | |
48-D15 | BSGfV | Reverse | NAa | NA | NA | NA | NA |
72-M20 | BSGfV | Forward | 536 | Calycanthus fertilis chloroplast genome | e.174 | ATPase α subunit (Calycanthus fertilis) | 8e.81 |
72-M20 | BSGfV | Reverse | NA | NA | NA | NA | NA |
73-C24 | BSGfV | Forward | 559 | No significant similarity found | No significant similarity found | ||
73-C24 | BSGfV | Reverse | 480 | Calycanthus fertilis chloroplast genome | 1e.15 | DNA-directed RNA polymerase common soapwort chloroplast | 2e.05 |
94-I16 | BSGfV | Forward | 576 | No significant similarity found | No significant similarity found | ||
94-I16 | BSGfV | Reverse | 449 | M. acuminata retrotransposon monkey | 8e.07 | No significant similarity found |
NA, not available.