TABLE 2.
Activity of 5S genes in yeast strains with different gene copy numbers, strains at different growth stages, and strains with mutations
Strain (genotype) | Growth stage | Approximate no. of rDNA repeats/cell | No. of 5S genes tallied | Active 5S genes/cell (%) | Approximate no. of active 5S genes/cellc | Mean no. of pols/active gene | SD | 95% CI | Approximate no. of pols on 5S genes/celld |
---|---|---|---|---|---|---|---|---|---|
NOY886 | Log | 42b | 464 | 69 | 29 | 1.96 | 0.74 | 0.08 | 57 |
30 min of rapamycin | 42 | 103 | 46 | 19 | 1.87 | 0.82 | 0.24 | 36 | |
Post-log | 42 | 122 | 34 | 14 | 1.39 | 0.59 | 0.18 | 19 | |
NOY1051a | Log | 143 | 347 | 30 | 43 | 1.73 | 0.71 | 0.14 | 74 |
NOY388 (wt SPT4) | Log | 177 | 227 | 21 | 37 | 1.81 | 0.88 | 0.25 | 67 |
NOY2167 (spt4Δ) | Log | 64 | 234 | 35 | 22 | 1.77 | 0.79 | 0.17 | 39 |
CY1 (wt LHP1) | Log | 190 | 249 | 26 | 49 | 1.54 | 0.66 | 0.13 | 75 |
CY4 (lhp1Δ) | Log | 140 | 160 | 34 | 48 | 2.12 | 0.67 | 0.14 | 102 |
The NOY1051 data include the results for the single nucleolus shown in Fig. 3, as well as additional data representing smaller-rDNA-repeat multimers from this strain, similar to the data used for the other strains shown here. See breakdown in Table S5 in the supplemental material.
The four bold rows show data for four logarithmically growing control strains with different gene copy numbers. These data were used for the graphs in Fig. 4A to C.
Derived from rDNA repeat number and estimated percentage of active genes per cell.
Derived from approximate number of active 5S genes/cell and mean number of pols/active gene.