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. 2008 Apr 28;36(Web Server issue):W281–W285. doi: 10.1093/nar/gkn226

Table 1.

Completeness and diversity statistics for two hypothetical site-saturation mutagenesis libraries, in which two codons have been randomized according to different schemes (NNK + NDT or NNB + NAY)

Library No. of clones sampled GLUE GLUE-IT


No. of distinct DNA variants DNA completenessa No. of distinct amino acid variantsb Amino acid completenessc
NNK + NDT 100 88 0.23 77 0.32
500 280 0.73 196 0.82
1000 356 0.93 229 0.95
1500 376 0.98 237 0.99
NNB + NAY 100 88 0.23 53 0.66
500 280 0.73 78 0.98
1000 356 0.93 80 1.00
1500 376 0.98 80 1.00

aThe fraction of all possible DNA sequence variants (384 for each library) that are represented in the sample.

bNot including variants with stop codons.

cThe fraction of all possible amino acid variants (240 for Library 1; 80 for Library 2) that are sampled.