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. 2008 May 24;36(Web Server issue):W25–W29. doi: 10.1093/nar/gkn320

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© 2008 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Result of a SCANPS search of the SCOP database displayed in the tree-based SCOP results interface, with a pairwise alignment displayed in Jalview in the foreground. The tree frame on the left displays the SCOP hierarchy; the node frame on the right on displays the page for a particular node. The node's SCOP classification is listed at the top of the page. This is followed by summary data from SCANPS and then the domain table. For each domain, the table lists its SCOP classification below the current node, followed by the data for the domain returned by SCANPS. Pairwise alignments for each hit are listed below the domain table; these can also be displayed in Jalview by clicking the appropriate button. The alignment in Jalview is shaded to indicate the positions of strands (blue) and helices (red) in the database structure.