Table 1. Allele frequency distributions across PG/PDS cases and controls for the three LOXL1 SNPs.
|
SNPs (Allele) |
Phenotypes |
Allele frequency (Counts) |
p value |
|
|
Cases |
Controls |
|||
|
rs1048661
(G) |
PG+PDS |
0.674 (97/47) |
0.724 (152/58) |
0.309 |
| PG |
0.679 (57/27) |
0.734 (152/58) |
0.439 |
|
| PDS |
0.667 (40/20) |
0.724 (152/58) |
0.389 |
|
|
rs3825942
(G) |
PG+PDS |
0.852 (121/21) |
0.822 (176/38) |
0.461 |
| PG |
0.866 (71/11) |
0.822 (176/38) |
0.368 |
|
| PDS |
0.833 (50/10) |
0.822 (176/38) |
0.844 |
|
| rs2165241 (T) | PG+PDS |
0.514 (74/70) |
0.471 (99/111) |
0.432 |
| PG |
0.524 (44/40) |
0.471 (99/111) |
0.417 |
|
| PDS | 0.500 (30/30) | 0.471 (99/111) | 0.91 | |