Table 4.
Genes in liver changed in two or more vegetable oil diets compared to salmon fed fish oil
| PROCESS | ACC. NO. | LO | RO | SO | EST-BLASTX OR EST-TC-BLASTX |
| HUFA BIOSYNTHESIS | DW588445 | 4.131 | 6.1 | 3.529 | (Q9DEX7) Delta-5/delta-6 fatty acid desaturase |
| EG354827 | 3.814 | 3.864 | 0.685 | (AAL82631) Salmon delta-5 fatty acyl desaturase, TC51151 | |
| EG647320 | 4.286 | 3.37 | 1.909 | (Q9DEX7) Delta-5/delta-6 fatty acid desaturase | |
| AAL82631 | 5.624 | 11.29 | 8.027 | (Q9DEX7) Delta-5/delta-6 fatty acid desaturase | |
| AAL82631 | 1.84 | 3.657 | 2.932 | (Q9DEX7) Delta-5/delta-6 fatty acid desaturase | |
| AAR21624 | 2.564 | 4.248 | 2.688 | (Q9DEX7) Delta-5/delta-6 fatty acid desaturase | |
| CHOLESTEROL AND ISOPRENOID BOSYNTHESIS | CK875291 | 13.61 | 12.23 | 13.86 | (O35760) Isopentenyl-diphosphate delta-isomerase 1 |
| CO471940 | 6.282 | 8.078 | 6.958 | (Q4R4W5) Isopentenyl-diphosphate delta-isomerase 1 | |
| EG647637 | 14.11 | 2.921 | 20.59 | (P52019) squalene epoxidase | |
| CK874989 | 4.679 | 4.488 | 3.376 | (O88822) Lathosterol oxidase | |
| CK881623 | 1.132 | 0.762 | 0.764 | (O42563) Cytochrome P450 3A27 | |
| LIPID METABOLISM AND TRANSPORT | NAN | 1.494 | 1.881 | 1.613 | (CAA57449) apolipoprotein B [Salmo salar], TC40920 |
| AM042514 | 1.085 | 1.84 | 1.618 | (Q96BZ4) PLD4 phospholipase D family, member 4, TC47857 | |
| DW589827 | 1.403 | 0.968 | 1.27 | (P59837) Retinol dehydrogenase 12 | |
| BF228485 | 0.841 | 0.752 | 1.228 | (Q9R182) Angiopoietin-related protein 3 | |
| NAN. | 0.489 | 0.709 | 0.652 | (Q9BYV7) BCDO2 Beta-carotene dioxygenase 2 | |
| AJ416951 | 0.541 | 0.696 | 0.799 | (O88275) Peroxisome proliferator-activated receptor gamma | |
| AM402843 | 0.362 | 0.67 | 0.441 | (Q5TZ29) Novel protein similar to vertebrate apolipoprotein B | |
| CARBOHYDRATE METABOLISM | CK880626 | 1.093 | 1.816 | 2.013 | (P05370) G6PD Glucose-6-phosphate 1-dehydrogenase |
| AM083390 | 2.685 | 1.291 | 1.873 | (Q5MIB6) Glycogen phosphorylase | |
| NAN | 2.316 | 1.609 | 1.256 | (Q04760) GLO1 glyoxalase 1, TC39739 | |
| EG355381 | 0.47 | 0.659 | 0.7 | (P15121) AKR1B1 aldo-keto reductase 1B1, TC40780 | |
| MITOCHONDRIAL FUNCTION | DW589236 | 8.96 | 2.524 | 1.84 | (Q96EL2) MRPS24 mitochondrial ribosomal protein S24, TC34551 |
| CK891719 | 3.013 | 2.495 | 2.212 | (Q99595) Mitochondrial import inner membrane translocase Tim17 A | |
| NAN | 2.067 | 1.455 | 1.582 | (Q9EQ20) aldh6a1 aldehyde dehydrogenase 6A1, TC37457 | |
| CK881059 | 0.97 | 0.515 | 0.587 | (Q9H2U2) Inorganic pyrophosphatase 2, mitochondrial | |
| EG649042 | 2.754 | 0.644 | 0.763 | (P16036) Phosphate carrier protein, mitochondrial | |
| PROTEIN PROCESSING AND TURNOVER | CK898137 | 2.407 | 1.258 | 1.377 | (Q5ZIJ9) Ubiquitin ligase protein MIB2 |
| CK878932 | 2.384 | 1.532 | 1.599 | (P03974) Transitional endoplasmic reticulum ATPase | |
| BM414061 | 5.083 | 5.299 | 5.287 | (P97571) Calpain-1 catalytic subunit | |
| CK893924 | 1.906 | 1.819 | 2.368 | (Q99614) Tetratricopeptide repeat protein 1 | |
| DW591059 | 1.6 | 1.198 | 1.72 | (ABQ57500) small heat shock protein HSPB9, TC57595 | |
| AM397488 | 0.357 | 0.941 | 0.517 | (P45878) FK506-binding protein 2, TC38192 | |
| RNA PROCESSING | CK888026 | 1.133 | 1.293 | 1.791 | (P09651) heterogeneous nuclear ribonucleoprotein A1, TC61954 |
| CK892099 | 2.289 | 1.389 | 1.697 | (P28048) La ribonucleoprotein A | |
| DW588498 | 1.629 | 1.995 | 2.155 | (Q9D198) syf2 SYF2 homolog, RNA splicing factor, TC34249 | |
| CK891976 | 1.222 | 1.093 | 1.373 | (Q6PDM2) sfrs1 splicing factor, arginine/serine-rich 1, DY729372 | |
| DW589408 | 0.538 | 0.625 | 0.56 | (Q9D0E1) heterogeneous nuclear ribonucleoprotein M, TC35947 | |
| CK884048 | 1.354 | 0.792 | 0.874 | (P62317) Small nuclear ribonucleoprotein Sm D2 | |
| AJ425602 | 0.526 | 0.481 | 0.578 | (Q5RF83) Cold-inducible RNA-binding protein | |
| SIGNAL TRANSDUCTION | CK898218 | 2.04 | 1.571 | 1.642 | (Q6PH57) Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta1 |
| CK881679 | 2.84 | 1.823 | 2.093 | (Q8JGT0) Casein kinase I alpha, TC40170 | |
| NAN | 0.531 | 0.637 | 0.812 | (Q8BXH3) gucy1b2 guanylate cyclase 1, soluble, beta 2, TC44944 | |
| CK879754 | 0.333 | 0.627 | 0.428 | (Q14511) Enhancer of filamentation 1 | |
| CK877929 | 0.877 | 0.528 | 0.416 | (Q2M5E4) RGS21 regulator of G-protein signaling 21, TC38138 | |
| CK884662 | 0.258 | 0.521 | 0.539 | (P62142) Serine/threonine protein phosphatase PP1b catalytic | |
| AM049833 | 0.603 | 0.862 | 0.689 | (P62155) Calmodulin | |
| BF228513 | 0.402 | 0.506 | 0.682 | (Q8CFJ8) par-6 partitioning defective 6 homolog gamma, BF228513 | |
| TRANSCRIPTION | CN181085 | 1.588 | 1.189 | 1.597 | (Q8BQ46) TAF15 RNA polymerase II, TC53593 |
| EG648659 | 1.637 | 1.396 | 1.09 | (Q6GPQ6) Endothelial differentiation-related factor 1 homolog | |
| AM402809 | 1.363 | 1.469 | 1.242 | (Q8BG15) ctdspl2 CTD small phosphatase like 2 | |
| CK898087 | 0.698 | 0.627 | 0.699 | (Q9ERU2) Zinc finger protein 22 | |
| TRANSLATION | DW588363 | 1.032 | 1.227 | 1.414 | (P17508) Elongation factor 1-alpha, oocyte form |
| EG648663 | 1.305 | 1.076 | 1.433 | (Q9WV70) Nucleolar complex protein 2 homolog | |
| NAN | 1.974 | 1.225 | 1.812 | (P18077) RPL35a ribosomal protein L35a, TC60182 | |
| EG647766 | 0.695 | 0.74 | 0.933 | (P47826) 60S acidic ribosomal protein P0 | |
| CK886497 | 0.559 | 0.688 | 0.854 | (P57776) Elongation factor 1-delta | |
| EXTRACELLULAR MATRIX | CK877333 | 1.554 | 2.258 | 2.234 | (Q98967) Cystatin |
| CK876354 | 0.869 | 0.671 | 0.631 | (Q5D0F2) serine protease inhibitor, Kunitz type, 2, TC52802 | |
| AM042526 | 0.534 | 0.888 | 0.45 | (P48307) TFPI2 tissue factor pathway inhibitor 2, TC51552 | |
| CK885060 | 0.386 | 0.419 | 0.476 | (BAB55662) collagen a3(I), TC58897 | |
| AJ424854 | 0.432 | 0.483 | 0.776 | (O93486) Alpha 3 type I collagen, TC43437 | |
| AJ425530 | 0.191 | 0.466 | 0.554 | (Q9JM06) EGF- fibulin-like extracellular matrix protein 2, TC48959 | |
| IMMUNE FUNCTION | AM042172 | 1.456 | 0.444 | 0.472 | (AAW66975) Ig mu heavy chain secretory form, TC58483 |
| AM397498 | 0.075 | 0.667 | 0.446 | (P08603) Complement factor H | |
| ION TRANSPORT | AM402718 | 0.464 | 0.561 | 1.19 | (Q9NYB5) solute carrier organic anion transporter 1C1, TC47786 |
| CK885259 | 0.484 | 0.625 | 0.746 | (Q9YH26) Sodium/potassium-transporting ATPase alpha-1 chain | |
| AM402711 | 0.225 | 0.743 | 0.369 | (Q28677) Solute carrier family 12 member 4 | |
| APOPTOSIS | CK879455 | 0.432 | 0.616 | 0.587 | (O18998) Deoxyribonuclease-1 |
| GROWTH AND PROLIFERATION | EG649002 | 1.157 | 1.746 | 1.278 | (Q5R5D0) Cyclin-G1 |
| CK876621 | 0.74 | 1.594 | 1.492 | (Q80UU6) ogfr opioid growth factor receptor, TC55122 | |
| CYTOSKELETON | EG647322 | 4.417 | 4.16 | 2.259 | (P49006) MARCKS-like 1, TC40754 |
| DW588815 | 0.518 | 0.609 | 0.831 | (P68372) Tubulin beta-? Chain | |
| LYSOSOMAL | AM042088 | 0.598 | 0.579 | 0.583 | (Q90744) Alpha-N-acetylgalactosaminidase |
| AA BIOSYNTH | CK890942 | 0.545 | 0.671 | 0.727 | (A6H5Y3) mtr methionine synthase, TC52579 |
| MUSCLE | DW591140 | 1.938 | 1.327 | 1.268 | (P06741) MYL1 myosin, light chain 1, TC60893 |
| RESPIRATION | EG648831 | 0.467 | 0.426 | 0.386 | (P02142) Hemoglobin beta-1 subunit |
| UNKNOWN FUNCTION | EG647376 | 0.26 | 1.808 | 1.739 | (XP_691559) hypothetical protein [Danio rerio], TC35542 |
| NAN | 0.93 | 1.98 | 1.353 | (XP_001340266) hypothetical protein [Danio rerio], TC45154 | |
| AM042055 | 1.284 | 1.242 | 1.75 | (Q6I9Y2) THOC7 THO complex 7 homolog, TC54560 | |
| AM402609 | 2.644 | 2.732 | 1.84 | (Q56TU0) Type-4 ice-structuring protein precursor, TC59473 | |
| CK898312 | 1.492 | 1.959 | 2.192 | (XP_692475) similar to CG6282-PA, isoform A, TC34514 | |
| CK897369 | 0.705 | 0.732 | 0.677 | (Q5JVS0) HABP4 hyaluronan binding protein 4, TC34600 | |
| CK881591 | 0.288 | 0.295 | 0.408 | (XP_001338932) hypothetical protein [Danio rerio], TC55348 | |
| BM414217 | 0.655 | 0.969 | 0.709 | (XP_708731) hypothetical protein isoform 2, TC55763 | |
| TRANSPOSON | EG647536 | 0.993 | 1.841 | 1.305 | (XP_001341934) similar to ReO_6, retrotransposon, TC63376 |
| EG647893 | 0.318 | 0.428 | 0.423 | (AAW27349) SJCHGC04625 protein, retrotransposon, TC46087 | |
| BM414246 | 0.907 | 0.525 | 0.54 | (ABV31711) transposase, TC43560 | |
| CK879027 | 0.76 | 0.985 | 0.683 | (Q04202) Transposable element Tcb2 transposase | |
Numbers indicate expression ratio and a significant change (VO:FO; T-test, p ≤ 0.05) is indicated by bold type. LO, linseed oil; SO, soyabean oil; RO, rapeseed oil. Accession numbers of array features are provided. TC numbers are also provided, as described in text.