DNA binding capacity of DLX3WT and DLX3TDO.
EMSA were performed to compare the capacity of DLX3WT and
DLX3TDO to bind DNA. A, recombinant V5DLX3WT
and V5DLX3TDO were produced in E. coli, purified, and
different amounts of protein were analyzed in EMSA using the Dlx3 consensus
probe (GGGGGATAATTGCTGG). The inset on the left-hand
side shows a Western blot analysis of both recombinant proteins using
anti-V5 antibody. B, V5DLX3WT and V5DLX3TDO
were in vitro transcribed/translated (IVTT) from
pet15b-V5DLX3WT and pet15b-V5DLX3TDO (in vitro
transcribed/translated, reticulocyte lysate system) and analyzed by EMSA using
a probe containing a Dlx3 binding site previously identified in the
Runx2 promoter. Empty vector (pet15b, EV) was used as a
control. Excess unlabeled probe were used for self-competition (SC)
and anti-V5 antibody was used for supershift assays. Asterisks, free
radiolabeled probe; arrows, protein-DNA complexes;
arrowheads, antibody-protein-DNA complexes. C, Saos2-Tet-Off
cells transfected with pBi-GFP, pBi-V5DLX3WT/GFP,
pBi-V5DLX3TDO/GFP, or
pBi-V5DLX3WT/FlagDLX3TDO were grown with or without
doxycycline for 48 h. Nuclear extracts were harvested and EMSA was performed
using the Dlx3 consensus probe. D, recombinant V5DLX3WT
and V5DLX3TDO were analyzed by EMSA using different probes known to
bind Dlx3: a probe containing the Dlx3 consensus binding site determined by
SELEX (GGGGGATAATTGCTGG), a probe containing the Dlx3 binding site
identified in the osteocalcin (OC) promoter
(GGGCCCCCAATTAGTCCTCCC), and a probe containing the junctional
regulatory element (JRE) present in the promoter of the
glycoprotein hormone α subunit expressed in the placenta. Anti-V5
antibody was used for supershift assays.