Table 1.
Bird (DNA log) | Species | Isolate | Tissue Collection Date | Island | Enzyme | Number of cycles | Method | Total clones | Confirmed RFLP variants | Confirmed RFLP clones | Number of sequences |
1 (764) | Hemignathus virens | K1 | Survivor Day 89 PI | Kauai | Promega | 80 | PCR+1 | 20 | 4 | 16 | 0 |
2 (1145) | Hemignathus virens | K1 | Survivor Day 81 PI | Kauai | Promega | 80 | PCR+1 | 20 | 6 | 16 | 1 |
3 (1187) | Hemignathus virens | K1 | Survivor Day 69 PI | Kauai | Promega | 80 | PCR+1 | 20 | 5 | 17 | 0 |
4 (584) | Hemignathus virens | K1 | Fatality Day 16 PI | Kauai | Promega | 80 | standard | 17 | 4 | 15 | 1 |
Promega | 80 | PCR+1 | 20 | 5 | 18 | 1 | |||||
5 (591) | Hemignathus virens | K1 | Fatality Day 19 PI | Kauai | Promega | 80 | standard | 9 | 4 | 9 | 0 |
Promega | 80 | PCR+1 | 20 | 5 | 17 | 1 | |||||
6 (593) | Hemignathus virens | K1 | Fatality Day 19 PI | Kauai | Promega | 80 | standard | 10 | 2 | 5 | 0 |
Promega | 80 | PCR+1 | 20 | 5 | 16 | 0 | |||||
Promega | 35 | PCR+1 | 19 | 3 | 15 | 0 | |||||
Roche | 35 | PCR+1 | 20 | 2 | 20 | 10 | |||||
7 (601) | Hemignathus virens | KV115 | Fatality Day 16 PI | Hawaii | Promega | 80 | PCR+1 | 20 | 5 | 16 | 1 |
8 (613) | Hemignathus virens | KV115 | Fatality Day 23 PI | Hawaii | Promega | 80 | standard | 9 | 5 | 8 | 0 |
9 (736) | Hemignathus virens | KV115 | Survivor Day 81 PI | Hawaii | Promega | 80 | PCR+1 | 20 | 8 | 17 | 4 |
10 (620) | Hemignathus virens | KV115 | Fatality Day 24 PI | Hawaii | Promega | 80 | standard | 17 | 7 | 17 | 0 |
Promega | 80 | PCR+1 | 20 | 5 | 17 | 1 | |||||
11 (623) | Hemignathus virens | KV115 | Fatality Day 26 PI | Hawaii | Promega | 80 | standard | 9 | 2 | 6 | 0 |
Promega | 80 | PCR+1 | 20 | 4 | 13 | 0 | |||||
Promega | 35 | PCR+1 | 20 | 4 | 18 | 0 | |||||
Roche | 35 | PCR+1 | 20 | 2 | 18 | 10 | |||||
12 (1757) | Hemignathus virens | wild | Blood 4/20/96 | Kauai | Promega | 80 | standard | 8 | 3 | 6 | 1 |
13 (1765) | Vesteria coccinea | wild | Blood 4/5/95 | Hawaii | Promega | 80 | standard | 9 | 5 | 9 | 1 |
14 (1818) | Himatione sanguinea | wild | Blood 3/28/95 | Hawaii | Promega | 80 | standard | 10 | 5 | 9 | 0 |
15 (1928) | Hemignathus virens | wild | Blood 11/16/93 | Maui | Promega | 80 | standard | 3 | 1 | 2 | 0 |
16 (2881) | Chasiempis sandwichensis | wild | Blood 2/3/95 | Kauai | Promega | 80 | standard | 9 | 4 | 8 | 1 |
17 (3186) | Chasiempis sandwichensis | wild | Blood 3/13/96 | Kauai | Promega | 80 | standard | 7 | 6 | 6 | 1 |
18 (6775) | Hemignathus virens | wild | Blood 4/24/01 | Hawaii | Promega | 80 | standard | 1 | 1 | 1 | 1 |
Totals | 397 | 335 | 33 |
*Details regarding the clones include total number produced, number of confirmed (detected in > 1 bird) variants and clones, as well as the number of clones sequenced. Blood was collected from experimentally-infected birds that survived infection between days 69–89 post-infection (PI) when parasitemias had reached chronic levels. Pectoral muscle was collected from experimentally-infected birds that succumbed to infection between days 16–26 PI when acute phase parasitemias were high.