Table 1.
Ecological and genomic context of the fur homologues
| species and strains designation | RefSeq | genome size (Mbps) | %GC | Fur homologues | group | fur %GC | species habitat |
|---|---|---|---|---|---|---|---|
| Acidothermus cellulolyticus 11B | NC_008578 | 2,4 | 67 | Acel_2095 | A | 67,1 | aquatic; aerobic; thermophilic |
| Acel_0061 | E | 64,9 | |||||
| Acel_2085 | B | 65,5 | |||||
| Arthrobacter aurescens TC1 | NC_008711 | 4,6 | 62 | AAur_3058 | A | 60,6 | terrestrial – can transform heavy metals into less toxic forms; aerobic; mesophilic |
| AAur_2630 | B | 61,1 | |||||
| Arthrobacter sp. FB24 | NC_008541 | 4,7 | 66 | Arth_3077 | A | 65,8 | terrestrial – high degree of tolerance to chromium and other metals, may be radiation resistant and is a hydrocarbon degrader; mesophilic |
| Arth_2638 | B | 68,2 | |||||
| Bifidobacterium adolescentis ATCC 15703 | NC_008618 | 2,1 | 59 | BAD_0517 | B | 62,2 | host-associated – normal inhabitant of the healthy human gut; anaerobic; mesophilic |
| Bifidobacterium longum NCC2705 | NC_004307 | 2,3 | 60 | BL1128 | B | 61,2 | host-associated – normal component of gut flora; anaerobic; mesophilic |
| Corynebacterium diphtheriae NCTC 13129 | NC_002935 | 2,5 | 54 | DIP1710 | B | 51,5 | multiple – human pathogen, causative agent of diphtheria; aerobic; mesophilic |
| Corynebacterium efficiens YS-314 | NC_004369 | 3,1 | 63 | CE2180 | B | 63,1 | multiple; facultative aerobic; mesophilic |
| Corynebacterium glutamicum ATCC 13032 | NC_006958 | 3,3 | 54 | NCgl2200 | B | 53,3 | multiple; facultative aerobic; mesophilic |
| Corynebacterium jeikeium K411 | NC_007164 | 2,5 | 61 | jk0612 | B | 62,5 | multiple – member of the human skin flora, opportunistic pathogen; facultative aerobic; mesophilic |
| Frankia alni ACN14a | NC_008278 | 7,5 | 73 | FRAAL3168 | A | 72,0 | free-living or in symbiosis with plants roots; aerobic; mesophilic |
| FRAAL0074 | B | 72,0 | |||||
| FRAAL5117 | C | 71,4 | |||||
| FRAAL2798 | E | 76,4 | |||||
| Frankia sp. CcI3 | NC_007777 | 5,4 | 70 | Francci3_3112 | C | 70,3 | free-living or in symbiosis with plants roots; aerobic; mesophilic |
| Francci3_2661 | E | 73,9 | |||||
| Francci3_0061 | B | 71,8 | |||||
| Frankia sp. EAN1pec | NZ_AAII00000000 | 9,0 | 71 | Franean1_1532 | A | 70,3 | free-living or in symbiosis with plants roots; aerobic; mesophilic |
| Franean1_1806 | C | 73,2 | |||||
| Franean1_6149 | E | 72,4 | |||||
| Franean1_7263 | B | 74,1 | |||||
| Leifsonia xyli subsp. xyli str. CTCB07 | NC_006087 | 2,6 | 68 | Lxx02790 | A | 70 | host-associated; plant pathogen; aerobic; mesophilic |
| Lxx25010 | B | 69,1 | |||||
| Mycobacterium avium 104 | NC_008595 | 5,5 | 69 | MAV_2752 | A | 68,9 | host-associated – mammal pathogen; aerobic; mesophilic |
| MAV_2036 | B | 68,4 | |||||
| Mycobacterium avium subsp. paratuberculosis K-10 | NC_002944 | 4,8 | 69 | MAP1669c | A | 68,7 | multiple – mammal pathogen, causative agent of Johne's disease or paratuberculosis; aerobic; mesophilic |
| MAP2139 | B | 67,9 | |||||
| Mycobacterium bovis AF2122/97 | NC_002945 | 4,3 | 66 | Mb1944c | A | 62,3 | host-associated – mammal pathogen, causative agent of classic bovine tuberculosis; aerobic; mesophilic |
| Mb2380 | B | 62,8 | |||||
| Mycobacterium bovis BCG str. Pasteur | NC_008769 | 4,4 | 66 | BCG_1948c | A | 62,0 | host-associated – mammal pathogen, causative agent of classic bovine tuberculosis; aerobic; mesophilic |
| BCG_2373 | B | 62,8 | |||||
| Mycobacterium leprae TN | NC_002677 | 3,3 | 58 | ML0824 | B | 59,1 | host-associated – human pathogen, causative agent of leprosy; aerobic; mesophilic |
| Mycobacterium smegmatis str. MC2 155 | NC_008596 | 7,0 | 67 | MSMEG_6253 | A | 67,3 | host-associated – human pathogen; aerobic; mesophilic |
| MSMEG_6383 | A | 70,6 | |||||
| MSMEG_3460 | A | 64,9 | |||||
| MSMEG_4487 | B | 70,6 | |||||
| Mycobacterium sp. JLS | NC_009077 | 6,0 | 68 | Mjls_2712 | A | 68,5 | multiple; mesophilic |
| Mjls_5253 | A | 72,7 | |||||
| Mjls_3458 | B | 71,1 | |||||
| Mycobacterium sp. KMS | NC_008705 | 5,7 | 68 | Mkms_2726 | A | 68,8 | multiple; mesophilic |
| Mkms_4974 | A | 72,2 | |||||
| Mkms_3510 | B | 71,5 | |||||
| Mycobacterium sp. MCS | NC_008146 | 5,7 | 69 | Mmcs_2681 | A | 66,5 | multiple; mesophilic |
| Mmcs_4885 | A | 72,2 | |||||
| Mmcs_3447 | B | 71,5 | |||||
| Mycobacterium tuberculosis CDC1551 | NC_002755 | 4,4 | 66 | MT1960 | A | 62,3 | host-associated – human pathogen, causative agent of tuberculosis; aerobic; mesophilic |
| MT2428 | B | 62,6 | |||||
| Mycobacterium tuberculosis H37Rv | NC_000962 | 4.4 | 66 | Rv1909c | A | 62,3 | host-associated – human pathogen, causative agent of tuberculosis; aerobic; mesophilic |
| Rv2359 | B | 62,6 | |||||
| Mycobacterium ulcerans Agy99 | NC_008611 | 5,6 | 66 | MUL_2189 | A | 63,8 | host-associated – human pathogen, causative agent of Buruli or Bairnsdale ulcer; aerobic; mesophilic |
| MUL_3612 | B | 65,2 | |||||
| Mycobacterium vanbaalenii PYR-1 | NC_008726 | 6,5 | 68 | Mvan_2983 | A | 69,3 | multiple; aerobic; mesophilic |
| Mvan_3209 | A | 65,8 | |||||
| Mvan_3820 | B | 67,9 | |||||
| Nocardia farcinica IFM 10152 | NC_006361 | 6,0 | 71 | nfa3250 | A | 75,0 | multiple – opportunistic pathogens in a broad range of species; aerobic; mesophilic |
| nfa29490 | A | 68,5 | |||||
| nfa14570 | B | 70,2 | |||||
| Nocardioides sp. JS614 | NC_008699 | 5,0 | 72 | Noca_0839 | A | 74,5 | terrestrial; aerobic; mesophilic |
| Noca_0874 | A | 75,1 | |||||
| Noca_4251 | E | 70,2 | |||||
| Noca_1934 | B | 74,0 | |||||
| Propionibacterium acnesKPA171202 | NC_006085 | 2,6 | 60 | PPA0948 | B | 57,0 | host-associated – opportunistic human pathongen, causative agent of acne; anaerobic; mesophilic |
| Rhodococcus sp. RHA1 | NC_008268 | 7,8 | 68 | RHA1_ro04308 | A | 67,5 | terrestrial; aerobic; mesophilic |
| RHA1_ro05274 | A | 66,2 | |||||
| RHA1_ro01222 | B | 67,4 | |||||
| Rubrobacter xylanophilus DSM 9941 | NC_008148 | 3,2 | 71 | Rxyl_1228 | - | 67,6 | specialized – exhibits high tolerance to radiation; aerobic; thermophilic |
| Rxyl_1140 | - | 68,0 | |||||
| Rxyl_1144 | - | 75,6 | |||||
| Streptomyces avermitilis MA-4680 | NC_003155 | 9,0 | 71 | SAV3053 | D | 71,9 | multiple – mainly found in the soil; aerobic; mesophilic |
| SAV4029 | E | 64,8 | |||||
| SAV5631 | B | 70,7 | |||||
| Streptomyces coelicolor A3(2) | NC_003888 | 8,7 | 72 | SCO0561 | A | 74,3 | multiple – mainly found in the soil; aerobic; mesophilic |
| SCO5206 | D | 72,2 | |||||
| SCO4180 | E | 66,4 | |||||
| SCO2508 | B | 72,6 | |||||
| Thermobifida fusca YX | NC_007333 | 3,6 | 68 | Tfu_0145 Tfu_0856 |
A B |
68,8 64,6 |
multiple – mainly found on self-heated organic materials, its spores are known to cause allergic respiratory diseases; aerobic; thermophilic |
| Tropheryma whipplei TW08/27 | NC_004551 | 0,9 | 46 | - | - | Host-associated – human pathogen, causative agent of Whipple's disease; aerobic; mesophilic | |
| Tropheryma whipplei str. Twist | NC_004572 | 0,9 | 46 | - | - | Host-associated – human pathogen, causative agent of Whipple's disease; aerobic; mesophilic |