Table 2. Fitted unfolding and refolding kinetic parameters for variants that contain alanine to glycine substitutions in Nank1-5, Nank1-5C1, and Nank1-5C2a.
kf,H2O (sec-1) | mf (M-1) | ku,H2O (sec-1) | mu (M-1) | b (M-2) | c (M-3) | ||
---|---|---|---|---|---|---|---|
Nank1-7Δb | 0.48 | -0.22 | 0.00 | 1.702 | -0.17 | ||
| |||||||
Nank1-5 | 0.69 | -0.76 | 0.01 | 0.40 | |||
| |||||||
Nank1-5 (AG1) | 0.65 | -0.72 | 0.01 | 0.41 | 0c | ||
Nank1-5 (AG4) | 0.07 | -1.76 | 0.07 | 0.61 | 0.60 | ||
Nank1-5 (AG5) | 0.13 | -1.52 | 0.04 | 0.62 | 0.69 | ||
Nank1-5C1 | 5.92 | -0.24 | 1.68×10-5 | 1.27 | -0.09 | ||
| |||||||
Nank1-5C1 (AG1) | 5.92 | -0.20 | 1.78×10-5 | 1.28 | -0.09 | 0c | |
Nank1-5C1 (AG2) | 6.97 | -0.26 | 3.54×10-3 | 1.14 | -0.08 | -0.03 | |
Nank1-5C1 (AG3) | 8.43 | -0.43 | 3.64×10-3 | 0.86 | -0.08 | -0.06 | |
Nank1-5C1 (AG4) | 4.53 | -0.01 | 3.70×10-4 | 1.65 | -0.33 | 0.02 | 0.09 |
Nank1-5C1 (AG5) | 0.44 | -0.32 | 1.59×10-6 | 1.72 | -0.12 | 0.87 | |
Nank1-5C1 (AGC1) | 0.89 | -0.03 | 4.04×10-5 | 1.62 | -0.22 | 0.02 | 0.6 |
Nank1-5C2 | 34.7 | -0.11 | 1.16×10-6 | 1.25 | -0.07 | ||
| |||||||
Nank1-5C2 (AG1) | 37.2 | -0.14 | 1.71×10-6 | 1.21 | 0.07 | 0c | |
Nank1-5C2 (AG2) | 18.4 | -0.02 | 7.01×10-7 | 1.47 | -0.07 | 0.08 | |
Nank1-5C2 (AG3) | 35.3 | -0.06 | 1.83×10-5 | 1.27 | -0.09 | 0.00 | |
Nank1-5C2 (AG4) | 51.5 | -0.20 | 1.36×10-4 | 0.98 | -0.07 | -0.06 | |
Nank1-5C2 (AG5) | 32.3 | -0.03 | 4.77×10-7 | 1.60 | -0.11 | 0.02 | |
Nank1-5C2 (AGC1) | 1.91 | 0.10 | 5.02×10-10 | 2.24 | -0.14 | 1.05 | |
Nank1-5C2 (AGC2) | 11.1 | -0.21 | 5.70×10-7 | 1.47 | -0.09 | 0.40 |
Parameters were estimated by fitting equation (2) to the urea dependencies of the rate constants of the major refolding and unfolding phases.
Data taken from reference (22).
Φ-values of zero were assumed for substitutions in the first repeat, because folding rates are not affected by the substitution. Conditions: 25 mM Tris•HCl (pH 8.0), 150 mM NaCl, 20 °C.