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. 2008 Jul 30;3(7):e2798. doi: 10.1371/journal.pone.0002798

Table 1. Transcripts up-regulated (A) and down-regulated (B) at ZT0.

zt8/zt0 zt16/zt0 zt20/zt0 A
Ratio P-value Ratio P-value Ratio P-value Gene_ID Annotation
40,676 1,95E-02 37,195 4,81E-02 3,877 1,54E-02 sgn-U216348 APRR7 (APRR1/TOC1 family)
24,081 4,26E-03 46,603 1,13E-03 6,864 2,26E-03 sgn-U227341 short-chain dehydrogenase/reductase family protein
23,893 2,95E-03 5,277 2,44E-05 5,734 8,85E-04 sgn-U243036 unknown protein
21,624 1,73E-02 11,585 1,59E-02 3,264 1,18E-03 sgn-U214829 expressed protein
17,494 5,50E-04 3,399 3,04E-05 3,174 4,03E-03 sgn-U221348 expressed protein
17,069 1,99E-02 6,311 1,08E-02 3,050 2,09E-02 sgn-U231435 O-methyltransferase family 2 [Arabidopsis thaliana]
16,724 1,77E-02 8,194 8,13E-03 3,486 6,39E-03 sgn-U213589 protease inhibitor/seed storage/lipid transfer protein (LTP) family
15,621 3,66E-02 9,834 1,67E-02 8,262 3,62E-03 sgn-U214471 hydrolase, alpha/beta fold family
15,516 8,20E-03 10,086 2,04E-02 5,105 2,61E-02 sgn-U214470 hydrolase, alpha/beta fold family
15,269 1,02E-03 10,456 1,82E-03 5,413 6,03E-03 sgn-U218302 wound-responsive protein -related
12,718 1,21E-03 15,622 1,29E-02 6,601 2,23E-02 sgn-U233539 unknown protein
12,709 2,02E-02 12,884 2,01E-03 3,550 1,60E-03 sgn-U216720 cellulose synthase catalytic subunit
11,701 1,19E-02 3,192 3,78E-02 5,116 2,21E-02 sgn-U215735 heavy-metal-associated domain-containing protein
10,576 2,96E-02 10,126 1,65E-02 7,662 1,66E-03 sgn-U226639 cysteine protease XBCP3
10,292 2,30E-03 3,273 2,51E-02 9,745 1,96E-02 sgn-U222678 ABC transporter family protein similar to ABC1 protein
10,171 3,45E-02 3,181 8,48E-03 3,391 2,79E-02 sgn-U220461 unknown protein
9,650 1,78E-02 3,970 3,15E-03 6,221 2,55E-06 sgn-U213637 WRKY family transcription factor DNA-binding protein 4 WRKY4
9,611 1,51E-03 4,667 2,63E-02 3,541 1,27E-02 sgn-U217986 patatin-like latex allergen [Hevea brasiliensis]
9,092 1,10E-03 11,458 3,00E-04 3,311 6,37E-03 sgn-U220022 CLH2_ARATH Chlorophyllase 2
8,844 1,46E-02 6,183 9,89E-03 3,503 8,60E-03 sgn-U213926 drought-induced protein SDi-6 -
8,427 1,26E-02 6,856 6,09E-04 5,731 3,95E-03 sgn-U212562 glutamate decarboxylase 1 (GAD 1)
8,292 3,03E-02 4,683 1,71E-02 3,999 1,13E-02 sgn-U225595 AUX/IAA family
7,781 3,55E-03 3,635 2,40E-03 3,167 1,91E-04 sgn-U213578 BEL1-related homeotic protein 11 [Solanum tuberosum]
7,479 1,53E-02 6,450 2,52E-02 8,916 4,75E-03 sgn-U222728 senescence-associated protein -related
7,392 1,01E-03 3,554 6,16E-03 3,866 6,33E-03 sgn-U216076 receptor serine/threonine kinase PR5K [Arabidopsis thaliana]
7,323 1,37E-02 3,318 2,05E-02 6,838 9,15E-05 sgn-U224875 heat shock protein family
6,728 2,91E-02 5,074 6,38E-03 3,774 2,95E-03 sgn-U216827 cysteine proteinase
6,554 2,01E-03 8,854 3,68E-03 3,714 1,33E-02 sgn-U216414 unknown protein
5,751 4,52E-02 3,631 7,63E-03 3,077 1,24E-03 sgn-U213519 dehydration-induced protein (ERD15)
5,290 4,44E-03 7,321 2,52E-03 3,511 2,60E-04 sgn-U218536 serine/threonine protein kinase
5,208 4,04E-02 3,078 6,31E-03 3,248 2,52E-02 sgn-U232570 unknown protein
5,179 6,48E-03 3,203 4,97E-03 4,092 4,23E-03 sgn-U212706 light regulated protein -related
4,860 8,15E-03 4,314 1,92E-02 4,049 1,99E-03 sgn-U219226 senescence-associated protein
3,926 3,33E-02 4,668 3,77E-03 3,059 9,41E-03 sgn-U229252 nitrate transporter NRT1-1 [Glycine max]
3,864 1,81E-02 3,788 2,82E-02 3,152 2,06E-02 sgn-U214216 putative steroid membrane binding protein [Oryza sativa (japonica cultivar-group)]
3,697 9,00E-03 5,706 1,16E-02 10,814 9,84E-04 sgn-U215359 1-aminocyclopropane-1-carboxylate oxidase homolog (Protein E8)
3,071 1,25E-02 3,300 2,47E-02 8,554 7,00E-03 sgn-U217504 zinc finger (C3HC4-type RING finger) family protein (RMA1)