Table 1.

Functionalities of Protein Mapping Module

Functionality	Current	Future
Input Data	Protein ID list, Peptide sequence	Protein or gene ID list, Peptide sequence
Data Type	Mass spectrometry (MS)	MS, 2D gel electrophoresis, immuno-precipitation (IP), gene expression
Sequence Library	UniProt (UniRef100 + unique UniParc)	UniProt (UniRef100 + unique UniParc), Genomic (SNP, EST, gene model), Protein identification DB (PRIDE, gpmDB)
Mapping Method	Protein ID, Peptide	Protein and gene ID, Peptide, Protein and gene name